Difference between revisions of "2OXOGLUTDECARB-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-oxoglut...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2] | ** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2] | ||
| + | * common name: | ||
| + | ** 2-oxoglutarate decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
** Oxoglutarate decarboxylase | ** Oxoglutarate decarboxylase | ||
| Line 13: | Line 13: | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ | + | ** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 2-oxoglutarate | + | ** 1 2-oxoglutarate[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''=>''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
* Gene: [[SJ21701]] | * Gene: [[SJ21701]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| Line 26: | Line 24: | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ13629]] | * Gene: [[SJ13629]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ06474]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| Line 40: | Line 40: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189] | ||
* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P23129 P23129] | ** [http://www.uniprot.org/uniprot/P23129 P23129] | ||
| Line 55: | Line 57: | ||
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2] | ** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-1.2.4.2}} | {{#set: ec number=EC-1.2.4.2}} | ||
| + | {{#set: common name=2-oxoglutarate decarboxylase}} | ||
{{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}} | {{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=SJ21701|SJ13629|SJ06474}} |
{{#set: in pathway=PWY-5084|PWY66-398}} | {{#set: in pathway=PWY-5084|PWY66-398}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:42, 10 January 2019
Contents
Reaction 2OXOGLUTDECARB-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- 2-oxoglutarate decarboxylase
- Synonym(s):
- Oxoglutarate decarboxylase
- 2-oxoglutarate decarboxylation
Reaction Formula
- With identifiers:
- 1 2-KETOGLUTARATE[c] + 1 Oxo-glutarate-dehydrogenase-lipoyl[c] + 1 PROTON[c] => 1 Oxo-glutarate-dehydro-suc-DH-lipoyl[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 2-oxoglutarate[c] + 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] + 1 H+[c] => 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ21701
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13629
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ06474
- Source: orthology-ectocarpus_siliculosus
Pathways
- PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
- 3 reactions found over 3 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- UNIPROT:
