Difference between revisions of "PHENYLALANINE--TRNA-LIGASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20] | ||
* common name: | * common name: | ||
** phenylalanine-tRNA ligase | ** phenylalanine-tRNA ligase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
| Line 13: | Line 13: | ||
** 1 [[PHE-tRNAs]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] | ** 1 [[PHE-tRNAs]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] | ||
* With common name(s): | * With common name(s): | ||
| − | ** 1 a | + | ** 1 a tRNAPhe[c] '''+''' 1 L-phenylalanine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-phenylalanyl-[tRNAPhe][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ10005]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 28: | Line 28: | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ07745]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ20176]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 48: | Line 48: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660] | ** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660] | ||
| Line 110: | Line 110: | ||
** [http://www.uniprot.org/uniprot/P15624 P15624] | ** [http://www.uniprot.org/uniprot/P15624 P15624] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-6.1.1.20}} | {{#set: ec number=EC-6.1.1.20}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=phenylalanine-tRNA ligase}} |
| + | {{#set: gene associated=SJ10005|SJ20825|SJ04988|SJ07745|SJ20176}} | ||
{{#set: in pathway=TRNA-CHARGING-PWY}} | {{#set: in pathway=TRNA-CHARGING-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 15:07, 10 January 2019
Contents
Reaction PHENYLALANINE--TRNA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- phenylalanine-tRNA ligase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 a tRNAPhe[c] + 1 L-phenylalanine[c] + 1 ATP[c] => 1 an L-phenylalanyl-[tRNAPhe][c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ10005
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20825
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04988
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07745
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20176
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P94283
- Q9ZDB4
- Q9WZS9
- Q9PP34
- P56145
- O67620
- O73984
- Q9Z6R6
- Q58508
- P56146
- O27545
- O26837
- O58391
- O83938
- P47436
- O67087
- O83059
- O84843
- Q9UYX3
- Q9Z7W0
- Q9PJR8
- P47437
- Q9ZKF9
- Q9UYX2
- Q9ZKF8
- Q9JR76
- Q57911
- P43819
- P94282
- O84481
- Q9ZDB5
- Q9WZS8
- Q9RRX8
- Q9PP35
- P43820
- Q46107
- P15434
- Q5SGX1
- P37984
- P51346
- P75563
- P75564
- Q55187
- P95960
- P95961
- Q49032
- P08312
- P07395
- O42870
- O13432
- Q9GYS8
- O42849
- P17921
- P17922
- P15625
- P08425
- P15624
