Difference between revisions of "RXN-11026"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11026 RXN-11026] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase * ec numbe...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** acyl-CoA oxidase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 +
* common name:
 +
** acyl-CoA oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[TRANS-D2-ENOYL-COA]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[TRANS-D2-ENOYL-COA]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 2,3,4-saturated fatty acyl CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 a trans-2-enoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 oxygen[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c] '''=>''' 1 a (2E)-alkan-2-enoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
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** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ03090]]
+
* Gene: [[SJ07451]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ19669]]
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ13468]]
 
* Gene: [[SJ13468]]
Line 29: Line 28:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ07451]]
+
* Gene: [[SJ03090]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ19669]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
Line 48: Line 50:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O65202 O65202]
 +
** [http://www.uniprot.org/uniprot/O65201 O65201]
 +
** [http://www.uniprot.org/uniprot/O23977 O23977]
 +
** [http://www.uniprot.org/uniprot/P13711 P13711]
 +
** [http://www.uniprot.org/uniprot/P34355 P34355]
 +
** [http://www.uniprot.org/uniprot/P07872 P07872]
 +
** [http://www.uniprot.org/uniprot/P11356 P11356]
 +
** [http://www.uniprot.org/uniprot/P06598 P06598]
 +
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
 +
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=acyl-CoA oxidase}}
 
 
{{#set: ec number=EC-1.3.3.6}}
 
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: gene associated=SJ07452|SJ03090|SJ19669|SJ13468|SJ07451}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: in pathway=PWY-5136|PWY-7288|PWY66-391}}
+
{{#set: gene associated=SJ07452|SJ07451|SJ13468|SJ03090|SJ19669}}
 +
{{#set: in pathway=PWY-7007|PWY-5136|PWY-7288|PWY66-391}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:11, 10 January 2019

Reaction RXN-11026

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • acyl-CoA oxidase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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