Difference between revisions of "RXN-17252"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17252 RXN-17252] == * direction: ** LEFT-TO-RIGHT * common name: ** pheophorbide a oxygenase *...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 2 [[ | + | ** 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[CPD-7061]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-18666]][c] '''+''' 1 [[WATER]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 2 | + | ** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 pheophorbide a[c] '''+''' 1 oxygen[c] '''+''' 2 H+[c] '''=>''' 1 epoxypheophorbide a[c] '''+''' 1 H2O[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
* Gene: [[SJ17313]] | * Gene: [[SJ17313]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[SJ22311]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 24: | Line 27: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | * Gene: [[ | + | * Gene: [[SJ00278]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
* Gene: [[SJ22309]] | * Gene: [[SJ22309]] | ||
| − | |||
| − | |||
| − | |||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927] | * [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927] | ||
| − | ** ''' | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
| + | * [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098] | ||
| + | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 43: | Line 43: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48161 48161] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=pheophorbide a oxygenase}} | {{#set: common name=pheophorbide a oxygenase}} | ||
| − | {{#set: gene associated=SJ17313|SJ08869|SJ07178| | + | {{#set: gene associated=SJ17313|SJ22311|SJ08869|SJ07178|SJ00278|SJ22309}} |
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-6927|PWY-5098}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 14:21, 10 January 2019
Contents
Reaction RXN-17252
- direction:
- LEFT-TO-RIGHT
- common name:
- pheophorbide a oxygenase
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 Reduced-ferredoxins[c] + 1 CPD-7061[c] + 1 OXYGEN-MOLECULE[c] + 2 PROTON[c] => 1 CPD-18666[c] + 1 WATER[c] + 2 Oxidized-ferredoxins[c]
- With common name(s):
- 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 1 pheophorbide a[c] + 1 oxygen[c] + 2 H+[c] => 1 epoxypheophorbide a[c] + 1 H2O[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ17313
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ22311
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08869
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07178
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ00278
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ22309
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6927, chlorophyll a degradation II: PWY-6927
- 2 reactions found over 5 reactions in the full pathway
- PWY-5098, chlorophyll a degradation I: PWY-5098
- 2 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
