Difference between revisions of "RXN-12461"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA (carboxymethyluridine3...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.1.1.229 EC-2.1.1.229] | ** [http://enzyme.expasy.org/EC/2.1.1.229 EC-2.1.1.229] | ||
| + | * common name: | ||
| + | ** tRNA (carboxymethyluridine34-5-O)-methyltransferase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[carbo-me-ur-34-tRNA]][c] '''=>''' 1 [[5-2-me-oxy-2-oxo-et-ur-34-tRNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 S-adenosyl-L-methionine[c] '''+''' 1 a carboxymethyluridine34 in tRNA[c] '''=>''' 1 a 5-(2-methoxy-2-oxoethyl)uridine34 in tRNA[c] '''+''' 1 S-adenosyl-L-homocysteine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 24: | Line 24: | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7888 PWY-7888] | ||
| + | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] | * [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] | ||
| − | ** ''' | + | ** '''11''' reactions found over '''15''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 31: | Line 33: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43209 43209] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.1.1.229}} | {{#set: ec number=EC-2.1.1.229}} | ||
| + | {{#set: common name=tRNA (carboxymethyluridine34-5-O)-methyltransferase}} | ||
{{#set: gene associated=SJ02625|SJ16612}} | {{#set: gene associated=SJ02625|SJ16612}} | ||
| − | {{#set: in pathway=PWY-6829}} | + | {{#set: in pathway=PWY-7888|PWY-6829}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 14:25, 10 January 2019
Contents
Reaction RXN-12461
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- tRNA (carboxymethyluridine34-5-O)-methyltransferase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 S-ADENOSYLMETHIONINE[c] + 1 carbo-me-ur-34-tRNA[c] => 1 5-2-me-oxy-2-oxo-et-ur-34-tRNA[c] + 1 ADENOSYL-HOMO-CYS[c]
- With common name(s):
- 1 S-adenosyl-L-methionine[c] + 1 a carboxymethyluridine34 in tRNA[c] => 1 a 5-(2-methoxy-2-oxoethyl)uridine34 in tRNA[c] + 1 S-adenosyl-L-homocysteine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ02625
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16612
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7888, tRNA-uridine 2-thiolation (cytoplasmic): PWY-7888
- 2 reactions found over 7 reactions in the full pathway
- PWY-6829, tRNA methylation (yeast): PWY-6829
- 11 reactions found over 15 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
