Difference between revisions of "3PGAREARR-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate mutas...") |
|||
Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12] | ||
* common name: | * common name: | ||
** phosphoglycerate mutase | ** phosphoglycerate mutase | ||
** 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | ** 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | ||
− | |||
− | |||
* Synonym(s): | * Synonym(s): | ||
Line 18: | Line 18: | ||
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | |||
− | |||
− | |||
* Gene: [[SJ16156]] | * Gene: [[SJ16156]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
− | * Gene: [[ | + | * Gene: [[SJ21024]] |
+ | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | * Gene: [[SJ01345]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | * Gene: [[ | + | * Gene: [[SJ09590]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | * | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
− | * | + | * Gene: [[SJ14984]] |
− | ** Source: [[ | + | ** Source: [[annotation-saccharina_japonica_genome]] |
− | * Gene: [[ | + | *** Assignment: EC-NUMBER |
+ | * Gene: [[SJ13678]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | * Gene: [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
+ | * Gene: [[SJ14916]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ15529]] | * Gene: [[SJ15529]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ21685]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
+ | * Gene: [[SJ14704]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[SJ12497]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: GO-TERM | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | * Gene: [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
+ | * Gene: [[SJ12299]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886] |
− | ** ''' | + | ** '''8''' reactions found over '''11''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] |
− | + | ** '''10''' reactions found over '''11''' reactions in the full pathway | |
− | + | ||
− | ** ''' | + | |
− | + | ||
− | + | ||
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | ||
− | ** '''12''' reactions found over '''12''' reactions in the full pathway | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
+ | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] | * [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] | ||
** '''10''' reactions found over '''12''' reactions in the full pathway | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | ||
+ | ** '''10''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] | * [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] | ||
** '''7''' reactions found over '''10''' reactions in the full pathway | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] |
− | + | ** '''6''' reactions found over '''9''' reactions in the full pathway | |
− | + | ||
− | ** ''' | + | |
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
** '''10''' reactions found over '''10''' reactions in the full pathway | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
Line 109: | Line 109: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15904 15904] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518] | ** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518] | ||
Line 148: | Line 148: | ||
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519] | ** [http://www.uniprot.org/uniprot/Q9X519 Q9X519] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: ec number=EC-5.4.2.12}} | ||
{{#set: common name=phosphoglycerate mutase}} | {{#set: common name=phosphoglycerate mutase}} | ||
{{#set: common name=2,3-bisphosphoglycerate-independent phosphoglycerate mutase}} | {{#set: common name=2,3-bisphosphoglycerate-independent phosphoglycerate mutase}} | ||
− | + | {{#set: gene associated=SJ16156|SJ21024|SJ01345|SJ09590|SJ14984|SJ13678|SJ14916|SJ15529|SJ21685|SJ14704|SJ12497|SJ12299}} | |
− | {{#set: gene associated= | + | {{#set: in pathway=PWY-6886|PWY-5484|GLYCOLYSIS|P124-PWY|PWY-7003|GLUCONEO-PWY|PWY-6901|PWY-7124|P341-PWY|PWY-6142|PWY-1042|PWY-7218|PWY-2221|PWY-5723}} |
− | {{#set: in pathway=PWY- | + | |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 14:44, 10 January 2019
Contents
Reaction 3PGAREARR-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- phosphoglycerate mutase
- 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 2-phospho-D-glycerate[c] <=> 1 3-phospho-D-glycerate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ16156
- Source: orthology-nannochloropsis_salina
- Source: orthology-nannochloropsis_salina
- Gene: SJ21024
- Source: orthology-nannochloropsis_salina
- Source: orthology-nannochloropsis_salina
- Gene: SJ01345
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ09590
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14984
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13678
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14916
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ15529
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ21685
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14704
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ12497
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ12299
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
- 8 reactions found over 11 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol: PWY-7003
- 8 reactions found over 10 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
- 10 reactions found over 12 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 10 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus): P341-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
- 10 reactions found over 15 reactions in the full pathway
- PWY-1042, glycolysis IV (plant cytosol): PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
- 7 reactions found over 10 reactions in the full pathway
- PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
- 6 reactions found over 9 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: