Difference between revisions of "RXN1F-148"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-148 RXN1F-148] == * direction: ** LEFT-TO-RIGHT * common name: ** δ-carotene β-cyc...") |
|||
| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19] | ** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19] | ||
| + | * common name: | ||
| + | ** δ-carotene β-cyclase | ||
* Synonym(s): | * Synonym(s): | ||
| Line 17: | Line 17: | ||
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ04962]] | * Gene: [[SJ04962]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | * Gene: [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| + | * Gene: [[SJ05110]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ11348]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
* Gene: [[SJ09087]] | * Gene: [[SJ09087]] | ||
| − | |||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
* Gene: [[SJ11349]] | * Gene: [[SJ11349]] | ||
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | * Gene: [[SJ05072]] | ||
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ11355]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
| Line 42: | Line 42: | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 54: | Line 54: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R06962 R06962] | ** [http://www.genome.jp/dbget-bin/www_bget?R06962 R06962] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-5.5.1.19}} | {{#set: ec number=EC-5.5.1.19}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=δ-carotene β-cyclase}} |
| + | {{#set: gene associated=SJ04962|SJ05110|SJ11348|SJ09087|SJ11349|SJ05072|SJ11355}} | ||
{{#set: in pathway=PWY-5947}} | {{#set: in pathway=PWY-5947}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:45, 10 January 2019
Contents
Reaction RXN1F-148
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- δ-carotene β-cyclase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 δ-carotene[c] => 1 α-carotene[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ04962
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05110
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ11348
- Source: orthology-arabidopsis_thaliana
- Gene: SJ09087
- Source: orthology-arabidopsis_thaliana
- Gene: SJ11349
- Source: orthology-arabidopsis_thaliana
- Gene: SJ05072
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ11355
- Source: orthology-arabidopsis_thaliana
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- LIGAND-RXN:
