Difference between revisions of "RXN1F-20"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == * direction: ** LEFT-TO-RIGHT * common name: ** magnesium chelatase * ec numb...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** magnesium chelatase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
 
** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
 +
* common name:
 +
** magnesium chelatase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[MG+2]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[MG+2]][c] '''+''' 1 [[WATER]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 protoporphyrin IX[c] '''+''' 1 Mg2+[c] '''=>''' 1 ADP[c] '''+''' 1 Mg-protoporphyrin[c] '''+''' 3 H+[c] '''+''' 1 phosphate[c]
+
** 1 protoporphyrin IX[c] '''+''' 1 ATP[c] '''+''' 1 Mg2+[c] '''+''' 1 H2O[c] '''=>''' 3 H+[c] '''+''' 1 Mg-protoporphyrin[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ07204]]
+
* Gene: [[SJ19927]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
 
* Gene: [[SJ12232]]
 
* Gene: [[SJ12232]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ16441]]
 
* Gene: [[SJ16441]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ07205]]
 
* Gene: [[SJ07205]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ19927]]
+
* Gene: [[SJ07204]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 
** '''4''' reactions found over '''9''' reactions in the full pathway
 
** '''4''' reactions found over '''9''' reactions in the full pathway
 
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 59: Line 59:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13962 13962]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=magnesium chelatase}}
 
 
{{#set: ec number=EC-6.6.1.1}}
 
{{#set: ec number=EC-6.6.1.1}}
−
{{#set: gene associated=SJ07204|SJ12232|SJ16441|SJ07205|SJ19927}}
+
{{#set: common name=magnesium chelatase}}
−
{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
+
{{#set: gene associated=SJ19927|SJ12232|SJ16441|SJ07205|SJ07204}}
 +
{{#set: in pathway=PWY-7159|PWY-5531|CHLOROPHYLL-SYN}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:52, 10 January 2019

Reaction RXN1F-20

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • magnesium chelatase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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