Difference between revisions of "RXN-11667"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11667 RXN-11667] == * direction: ** REVERSIBLE * common name: ** (S)-3-hydroxybutanoyl-CoA dehy...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** (S)-3-hydroxybutanoyl-CoA dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/4.2.1.150 EC-4.2.1.150]
 
** [http://enzyme.expasy.org/EC/4.2.1.150 EC-4.2.1.150]
 +
* common name:
 +
** (S)-3-hydroxybutanoyl-CoA dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
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* Gene: [[SJ03584]]
 
* Gene: [[SJ03584]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
−
* Gene: [[SJ07211]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ03913]]
 
* Gene: [[SJ03913]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[SJ07211]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
+
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
 
* [[P3-PWY]], gallate degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY]
 
* [[P3-PWY]], gallate degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY]
 
** '''3''' reactions found over '''11''' reactions in the full pathway
 
** '''3''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
 
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
** '''9''' reactions found over '''11''' reactions in the full pathway
 
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
−
** '''6''' reactions found over '''16''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 +
** '''6''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
*** Tool: [[pantograph]]
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26558 26558]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=(S)-3-hydroxybutanoyl-CoA dehydrogenase}}
 
 
{{#set: ec number=EC-4.2.1.150}}
 
{{#set: ec number=EC-4.2.1.150}}
−
{{#set: gene associated=SJ03584|SJ07211|SJ03913}}
+
{{#set: common name=(S)-3-hydroxybutanoyl-CoA dehydrogenase}}
−
{{#set: in pathway=P162-PWY|CENTFERM-PWY|PWY-5177|PWY-6583|PWY-6883|P3-PWY|PWY-7401|PWY-6863|PWY-5789}}
+
{{#set: gene associated=SJ03584|SJ03913|SJ07211}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=PWY-5177|PWY-5789|P3-PWY|PWY-6863|P162-PWY|PWY-7401|PWY-6883|PWY-6583|CENTFERM-PWY}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 14:53, 10 January 2019

Reaction RXN-11667

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • (S)-3-hydroxybutanoyl-CoA dehydrogenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5177, glutaryl-CoA degradation: PWY-5177
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic): P3-PWY
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 6 reactions found over 17 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered): PWY-6883
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 6 reactions found over 8 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-11667&oldid=21771"