Difference between revisions of "AGMATINE-DEIMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** a...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** agmatine deaminase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
 
** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
 +
* common name:
 +
** agmatine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-597]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 N-carbamoylputrescine[c] '''+''' 1 ammonium[c]
+
** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 ammonium[c] '''+''' 1 N-carbamoylputrescine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
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** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 43: Line 43:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
 
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=agmatine deaminase}}
 
 
{{#set: ec number=EC-3.5.3.12}}
 
{{#set: ec number=EC-3.5.3.12}}
 +
{{#set: common name=agmatine deaminase}}
 
{{#set: gene associated=SJ16434}}
 
{{#set: gene associated=SJ16434}}
−
{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
+
{{#set: in pathway=ARGDEG-III-PWY|PWY-43}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:11, 10 January 2019

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • agmatine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 ammonium[c] + 1 N-carbamoylputrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-43, putrescine biosynthesis II: PWY-43
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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