Difference between revisions of "RXN-11474"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11474 RXN-11474] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-glutaryl-[acp] methyl...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/2.3.1.179 EC-2.3.1.179] | ||
| + | ** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41] | ||
* common name: | * common name: | ||
** 3-oxo-glutaryl-[acp] methyl ester synthase | ** 3-oxo-glutaryl-[acp] methyl ester synthase | ||
** 3-oxoacyl-[acyl-carrier-protein] synthase | ** 3-oxoacyl-[acyl-carrier-protein] synthase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[Malonyl-acp-methyl-ester]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketoglutaryl-ACP-methyl-ester]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 a malonyl-[acp] methyl ester[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-glutaryl-[acp] methyl ester[c] '''+''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
* Gene: [[SJ00005]] | * Gene: [[SJ00005]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ15984]] |
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ18059]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ10624]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| Line 33: | Line 37: | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ06617]] |
| − | + | ||
| − | + | ||
| − | + | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| Line 51: | Line 52: | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: ec number=EC-2.3.1.179}} | ||
| + | {{#set: ec number=EC-2.3.1.41}} | ||
{{#set: common name=3-oxo-glutaryl-[acp] methyl ester synthase}} | {{#set: common name=3-oxo-glutaryl-[acp] methyl ester synthase}} | ||
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}} | {{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}} | ||
| − | + | {{#set: gene associated=SJ00005|SJ15984|SJ18059|SJ10624|SJ04443|SJ15983|SJ06617}} | |
| − | {{#set: gene associated=SJ15984| | + | |
{{#set: in pathway=PWY-6519}} | {{#set: in pathway=PWY-6519}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 15:15, 10 January 2019
Contents
Reaction RXN-11474
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- 3-oxo-glutaryl-[acp] methyl ester synthase
- 3-oxoacyl-[acyl-carrier-protein] synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 Malonyl-acp-methyl-ester[c] + 1 MALONYL-ACP[c] + 1 PROTON[c] => 1 3-Ketoglutaryl-ACP-methyl-ester[c] + 1 CARBON-DIOXIDE[c] + 1 ACP[c]
- With common name(s):
- 1 a malonyl-[acp] methyl ester[c] + 1 a malonyl-[acp][c] + 1 H+[c] => 1 a 3-oxo-glutaryl-[acp] methyl ester[c] + 1 CO2[c] + 1 a holo-[acyl-carrier protein][c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ00005
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ15984
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ18059
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ10624
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04443
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ15983
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ06617
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6519, 8-amino-7-oxononanoate biosynthesis I: PWY-6519
- 9 reactions found over 11 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
"3-oxo-glutaryl-[acp] methyl ester synthase" cannot be used as a page name in this wiki.
"3-oxoacyl-[acyl-carrier-protein] synthase" cannot be used as a page name in this wiki.
