Difference between revisions of "PYRIMSYN3-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphohydroxymethy...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7] | ** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7] | ||
| + | * common name: | ||
| + | ** phosphohydroxymethylpyrimidine kinase | ||
* Synonym(s): | * Synonym(s): | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910] | * [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910] | ||
** '''2''' reactions found over '''2''' reactions in the full pathway | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890] |
| − | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] | * [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] | ||
** '''4''' reactions found over '''6''' reactions in the full pathway | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282] | ||
| + | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356] | ||
| + | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
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== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509] | ** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509] | ||
| Line 53: | Line 53: | ||
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47] | ** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.7.4.7}} | {{#set: ec number=EC-2.7.4.7}} | ||
| + | {{#set: common name=phosphohydroxymethylpyrimidine kinase}} | ||
{{#set: gene associated=SJ18183}} | {{#set: gene associated=SJ18183}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-6910|PWY-6890|PWY-7357|PWY-7282|PWY-7356}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 15:30, 10 January 2019
Contents
Reaction PYRIMSYN3-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- phosphohydroxymethylpyrimidine kinase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 AMINO-HYDROXYMETHYL-METHYL-PYR-P[c] + 1 ATP[c] => 1 AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[c] + 1 ADP[c]
- With common name(s):
- 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] + 1 ATP[c] => 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] + 1 ADP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ18183
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
- 2 reactions found over 2 reactions in the full pathway
- PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
- 2 reactions found over 2 reactions in the full pathway
- PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
- 4 reactions found over 6 reactions in the full pathway
- PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
- 6 reactions found over 9 reactions in the full pathway
- PWY-7356, thiamine salvage IV (yeast): PWY-7356
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
