Difference between revisions of "RXN-12570"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-CoA dehydroge...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-hydroxyacyl-CoA dehydrogenase
 
−
** 3-hydroxyhexanoyl-CoA dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 +
* common name:
 +
** 3-hydroxyhexanoyl-CoA dehydrogenase
 +
** 3-hydroxyacyl-CoA dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADH]][c] '''+''' 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[OH-HEXANOYL-COA]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[OH-HEXANOYL-COA]][c] '''+''' 1 [[NAD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADH[c] '''+''' 1 3-oxohexanoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (S)-3-hydroxyhexanoyl-CoA[c] '''+''' 1 NAD+[c]
+
** 1 3-oxohexanoyl-CoA[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''=>''' 1 (S)-3-hydroxyhexanoyl-CoA[c] '''+''' 1 NAD+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ16470]]
+
* Gene: [[SJ01444]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
−
* Gene: [[SJ17348]]
+
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
 
* Gene: [[SJ16180]]
 
* Gene: [[SJ16180]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ06127]]
+
* Gene: [[SJ21390]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ01444]]
+
** Source: [[orthology-nannochloropsis_salina]]
 +
** Source: [[orthology-nannochloropsis_salina]]
 +
* Gene: [[SJ03584]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ21390]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
* Gene: [[SJ17348]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
* Gene: [[SJ07211]]
 
* Gene: [[SJ07211]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ03584]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ16470]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
** Source: [[orthology-nannochloropsis_salina]]
+
* Gene: [[SJ06127]]
−
** Source: [[orthology-nannochloropsis_salina]]
+
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
Line 54: Line 54:
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 68: Line 68:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04748 R04748]
 
** [http://www.genome.jp/dbget-bin/www_bget?R04748 R04748]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
 
−
{{#set: common name=3-hydroxyhexanoyl-CoA dehydrogenase}}
 
 
{{#set: ec number=EC-1.1.1.35}}
 
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: gene associated=SJ16470|SJ17348|SJ16180|SJ06127|SJ01444|SJ21390|SJ07211|SJ03584}}
+
{{#set: common name=3-hydroxyhexanoyl-CoA dehydrogenase}}
 +
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
 +
{{#set: gene associated=SJ01444|SJ16180|SJ21390|SJ03584|SJ17348|SJ07211|SJ16470|SJ06127}}
 
{{#set: in pathway=PWY-6863}}
 
{{#set: in pathway=PWY-6863}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:38, 10 January 2019

Reaction RXN-12570

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • 3-hydroxyhexanoyl-CoA dehydrogenase
    • 3-hydroxyacyl-CoA dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxohexanoyl-CoA[c] + 1 NADH[c] + 1 H+[c] => 1 (S)-3-hydroxyhexanoyl-CoA[c] + 1 NAD+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-12570&oldid=23209"