Difference between revisions of "ORNDECARBOX-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ornithine decar...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.1.1.17 EC-4.1.1.17] | ** [http://enzyme.expasy.org/EC/4.1.1.17 EC-4.1.1.17] | ||
| + | * common name: | ||
| + | ** ornithine decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[L-ORNITHINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 H+[c] '''+''' 1 L-ornithine[c] '''=>''' 1 CO2[c] '''+''' 1 putrescine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ13198]] | * Gene: [[SJ13198]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ16944]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[PWY-46]], putrescine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46] | * [[PWY-46]], putrescine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46] | ||
** '''1''' reactions found over '''1''' reactions in the full pathway | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
| + | * [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[ORNDEG-PWY]], superpathway of ornithine degradation: [http://metacyc.org/META/NEW-IMAGE?object=ORNDEG-PWY ORNDEG-PWY] | ||
| + | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| − | |||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 43: | Line 43: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22965 22965] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670] | ** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670] | ||
| Line 73: | Line 73: | ||
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9] | ** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-4.1.1.17}} | {{#set: ec number=EC-4.1.1.17}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=ornithine decarboxylase}} |
| − | {{#set: in pathway= | + | {{#set: gene associated=SJ13198|SJ16944}} |
| + | {{#set: in pathway=PWY-46|PWY-6305|ORNDEG-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 16:19, 10 January 2019
Contents
Reaction ORNDECARBOX-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- ornithine decarboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 L-ORNITHINE[c] => 1 CARBON-DIOXIDE[c] + 1 PUTRESCINE[c]
- With common name(s):
- 1 H+[c] + 1 L-ornithine[c] => 1 CO2[c] + 1 putrescine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13198
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16944
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-46, putrescine biosynthesis III: PWY-46
- 1 reactions found over 1 reactions in the full pathway
- PWY-6305, putrescine biosynthesis IV: PWY-6305
- 4 reactions found over 4 reactions in the full pathway
- ORNDEG-PWY, superpathway of ornithine degradation: ORNDEG-PWY
- 1 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
