Difference between revisions of "RXN0-2044"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2044 RXN0-2044] == * direction: ** REVERSIBLE * common name: ** 3-hydroxyacyl-CoA dehydrogenas...") |
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* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
− | |||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35] | ** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35] | ||
+ | * common name: | ||
+ | ** 3-hydroxyadipyl-CoA dehydrogenase | ||
+ | ** 3-hydroxyacyl-CoA dehydrogenase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[ | + | ** 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 (3S)-hydroxyadipyl-CoA[c] '''+''' 1 NAD+[c] '''<=>''' 1 | + | ** 1 (3S)-hydroxyadipyl-CoA[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 3-oxoadipyl-CoA[c] '''+''' 1 NADH[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[SJ16470]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
− | *** Assignment: | + | *** Assignment: GO-TERM |
* Gene: [[SJ16180]] | * Gene: [[SJ16180]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
+ | * Gene: [[SJ01444]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
* Gene: [[SJ21390]] | * Gene: [[SJ21390]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ03584]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
− | *** Assignment: | + | *** Assignment: EC-NUMBER |
− | + | ||
− | + | ||
− | + | ||
* Gene: [[SJ07211]] | * Gene: [[SJ07211]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
− | * Gene: [[ | + | * Gene: [[SJ17348]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
− | *** Assignment: | + | *** Assignment: GO-TERM |
* Gene: [[SJ06127]] | * Gene: [[SJ06127]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
== Pathways == | == Pathways == | ||
− | |||
− | |||
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321] | * [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321] | ||
** '''2''' reactions found over '''9''' reactions in the full pathway | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
Line 57: | Line 57: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34854 34854] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941] | ** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
− | |||
− | |||
{{#set: ec number=EC-1.1.1.35}} | {{#set: ec number=EC-1.1.1.35}} | ||
− | {{#set: gene associated= | + | {{#set: common name=3-hydroxyadipyl-CoA dehydrogenase}} |
− | {{#set: in pathway= | + | {{#set: common name=3-hydroxyacyl-CoA dehydrogenase}} |
+ | {{#set: gene associated=SJ16470|SJ16180|SJ01444|SJ21390|SJ03584|SJ07211|SJ17348|SJ06127}} | ||
+ | {{#set: in pathway=PWY0-321|PWY-1361}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 16:31, 10 January 2019
Contents
Reaction RXN0-2044
- direction:
- REVERSIBLE
- ec number:
- common name:
- 3-hydroxyadipyl-CoA dehydrogenase
- 3-hydroxyacyl-CoA dehydrogenase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 3-HYDROXYADIPYL-COA[c] + 1 NAD[c] <=> 1 PROTON[c] + 1 3-KETO-ADIPYL-COA[c] + 1 NADH[c]
- With common name(s):
- 1 (3S)-hydroxyadipyl-CoA[c] + 1 NAD+[c] <=> 1 H+[c] + 1 3-oxoadipyl-CoA[c] + 1 NADH[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ16470
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16180
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ01444
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ21390
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ03584
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07211
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ17348
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ06127
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY0-321, phenylacetate degradation I (aerobic): PWY0-321
- 2 reactions found over 9 reactions in the full pathway
- PWY-1361, benzoyl-CoA degradation I (aerobic): PWY-1361
- 2 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links