Difference between revisions of "BIOTIN-CARBOXYL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIOTIN-CARBOXYL-RXN BIOTIN-CARBOXYL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** biotin carboxylase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.3.4.14 EC-6.3.4.14]
 
** [http://enzyme.expasy.org/EC/6.3.4.14 EC-6.3.4.14]
 +
* common name:
 +
** biotin carboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[BCCP-dimers]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Carboxybiotin-BCCP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 a biotinylated [BCCP dimer][c] '''=>''' 1 phosphate[c] '''+''' 1 a carboxylated-biotinylated [BCCP dimer][c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''+''' 1 a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine[c] '''=>''' 1 phosphate[c] '''+''' 1 a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ02214]]
+
* Gene: [[SJ00485]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
* Gene: [[SJ14529]]
 
* Gene: [[SJ14529]]
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[SJ06726]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[SJ17987]]
 
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 32: Line 26:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ00485]]
+
* Gene: [[SJ12870]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ12670]]
+
* Gene: [[SJ02214]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ12870]]
+
* Gene: [[SJ12670]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 +
* Gene: [[SJ17987]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ06726]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
 
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
 
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
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** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=biotin carboxylase}}
 
 
{{#set: ec number=EC-6.3.4.14}}
 
{{#set: ec number=EC-6.3.4.14}}
−
{{#set: gene associated=SJ02214|SJ14529|SJ06726|SJ17987|SJ14528|SJ00485|SJ12670|SJ12870}}
+
{{#set: common name=biotin carboxylase}}
−
{{#set: in pathway=PWY0-1264}}
+
{{#set: gene associated=SJ00485|SJ14529|SJ14528|SJ12870|SJ02214|SJ12670|SJ17987|SJ06726}}
 +
{{#set: in pathway=PWY-5744|PWY0-1264|PWY-5743|PWY-5789}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 11:09, 10 January 2019

Reaction BIOTIN-CARBOXYL-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • biotin carboxylase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5744, glyoxylate assimilation: PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY0-1264, biotin-carboxyl carrier protein assembly: PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle: PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 18 reactions in the full pathway

Reconstruction information

External links





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