Difference between revisions of "CALVIN-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...")
 
 
Line 32: Line 32:
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''13''' reactions found over '''13''' reactions in the full pathway
+
  '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[1.2.1.13-RXN]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-saccharina_japonica_genome]]
+
 
* [[1TRANSKETO-RXN]]
 
* [[1TRANSKETO-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
 +
*** [[SJ12529]]
 
*** [[SJ12026]]
 
*** [[SJ12026]]
−
*** [[SJ12529]]
 
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[2TRANSKETO-RXN]]
 
* [[2TRANSKETO-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
 +
*** [[SJ12026]]
 
*** [[SJ12529]]
 
*** [[SJ12529]]
−
*** [[SJ12026]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[F16ALDOLASE-RXN]]
 
* [[F16ALDOLASE-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
−
*** [[SJ21513]]
 
 
*** [[SJ22520]]
 
*** [[SJ22520]]
 
*** [[SJ12479]]
 
*** [[SJ12479]]
 +
*** [[SJ13560]]
 
*** [[SJ17964]]
 
*** [[SJ17964]]
−
*** [[SJ13560]]
+
*** [[SJ21513]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[F16BDEPHOS-RXN]]
 
* [[F16BDEPHOS-RXN]]
 
** 7 associated gene(s):
 
** 7 associated gene(s):
 +
*** [[SJ14175]]
 +
*** [[SJ16950]]
 +
*** [[SJ17320]]
 +
*** [[SJ13518]]
 
*** [[SJ14821]]
 
*** [[SJ14821]]
 
*** [[SJ10463]]
 
*** [[SJ10463]]
−
*** [[SJ13518]]
 
−
*** [[SJ16950]]
 
−
*** [[SJ14175]]
 
 
*** [[SJ20807]]
 
*** [[SJ20807]]
−
*** [[SJ17320]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PHOSGLYPHOS-RXN]]
 
* [[PHOSGLYPHOS-RXN]]
 
** 6 associated gene(s):
 
** 6 associated gene(s):
−
*** [[SJ10780]]
 
−
*** [[SJ18020]]
 
−
*** [[SJ05024]]
 
 
*** [[SJ15992]]
 
*** [[SJ15992]]
−
*** [[SJ15971]]
+
*** [[SJ05024]]
 
*** [[SJ15991]]
 
*** [[SJ15991]]
 +
*** [[SJ18020]]
 +
*** [[SJ15971]]
 +
*** [[SJ10780]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PHOSPHORIBULOKINASE-RXN]]
 
* [[PHOSPHORIBULOKINASE-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
Line 97: Line 93:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIB5PISOM-RXN]]
 
* [[RIB5PISOM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 106: Line 102:
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
 
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
Line 119: Line 115:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[SEDOBISALDOL-RXN]]
 
* [[SEDOBISALDOL-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
Line 130: Line 126:
 
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
 
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
 
** 3 associated gene(s):
 
** 3 associated gene(s):
−
*** [[SJ17320]]
 
 
*** [[SJ10463]]
 
*** [[SJ10463]]
 +
*** [[SJ17320]]
 
*** [[SJ16950]]
 
*** [[SJ16950]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
 +
*** [[SJ10351]]
 +
*** [[SJ11011]]
 
*** [[SJ15388]]
 
*** [[SJ15388]]
 
*** [[SJ07665]]
 
*** [[SJ07665]]
−
*** [[SJ11011]]
 
 
*** [[SJ21027]]
 
*** [[SJ21027]]
−
*** [[SJ10351]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN]
 
== External links  ==
 
== External links  ==
−
* PLANTCYC : CALVIN-PWY
 
 
* ARACYC:
 
* ARACYC:
 
** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
* PLANTCYC : CALVIN-PWY
 
{{#set: taxonomic range=TAX-1117}}
 
{{#set: taxonomic range=TAX-1117}}
 
{{#set: taxonomic range=TAX-39119}}
 
{{#set: taxonomic range=TAX-39119}}
Line 175: Line 172:
 
{{#set: common name=Calvin-Benson-Bassham cycle}}
 
{{#set: common name=Calvin-Benson-Bassham cycle}}
 
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
 
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
−
{{#set: reaction found=13}}
+
{{#set: reaction found=12}}
 
{{#set: total reaction=13}}
 
{{#set: total reaction=13}}
−
{{#set: completion rate=100.0}}
+
{{#set: completion rate=92.0}}

Latest revision as of 12:15, 10 January 2019

Pathway CALVIN-PWY

Reaction(s) found

12 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links













Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=CALVIN-PWY&oldid=14851"