Difference between revisions of "RXN-15125"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125] == * direction: ** LEFT-TO-RIGHT * common name: ** L-serine ammonia-lyase * Sy...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[SER]][c] '''=>''' 1 [[ | + | ** 1 [[SER]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 L-serine[c] '''=>''' 1 | + | ** 1 L-serine[c] '''=>''' 1 2-aminoprop-2-enoate[c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 22: | Line 22: | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[SERDEG-PWY]], L-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] | * [[SERDEG-PWY]], L-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] | ||
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
| + | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] | ||
| + | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
| + | * [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] | ||
| + | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 33: | Line 33: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=40664 40664] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=L-serine ammonia-lyase}} | {{#set: common name=L-serine ammonia-lyase}} | ||
{{#set: gene associated=SJ15468|SJ08066}} | {{#set: gene associated=SJ15468|SJ08066}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=SERDEG-PWY|PWY-5497|PWY-3661}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 12:07, 10 January 2019
Contents
Reaction RXN-15125
- direction:
- LEFT-TO-RIGHT
- common name:
- L-serine ammonia-lyase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 SER[c] => 1 2-AMINOACRYLATE[c] + 1 WATER[c]
- With common name(s):
- 1 L-serine[c] => 1 2-aminoprop-2-enoate[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ15468
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08066
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- SERDEG-PWY, L-serine degradation: SERDEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-3661, glycine betaine degradation I: PWY-3661
- 3 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
