Difference between revisions of "P124-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
 
 
Line 8: Line 8:
 
** Bifidum fermentation
 
** Bifidum fermentation
 
** Bifidum pathway
 
** Bifidum pathway
−
** fructose-6-phosphate pathway
+
** fructose 6-phosphate pathway
 
** Bifidum shunt
 
** Bifidum shunt
 
** glucose fermentation to lactate (Bifidobacteria)
 
** glucose fermentation to lactate (Bifidobacteria)
 +
** glucose fermentation to lactic acid (Bifidobacteria)
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
Line 16: Line 17:
 
* [[1TRANSKETO-RXN]]
 
* [[1TRANSKETO-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
−
*** [[SJ12026]]
 
 
*** [[SJ12529]]
 
*** [[SJ12529]]
 +
*** [[SJ12026]]
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[2PGADEHYDRAT-RXN]]
 
* [[2PGADEHYDRAT-RXN]]
 
** 3 associated gene(s):
 
** 3 associated gene(s):
−
*** [[SJ13450]]
 
 
*** [[SJ08386]]
 
*** [[SJ08386]]
 
*** [[SJ17529]]
 
*** [[SJ17529]]
 +
*** [[SJ13450]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[3PGAREARR-RXN]]
 
* [[3PGAREARR-RXN]]
 
** 12 associated gene(s):
 
** 12 associated gene(s):
−
*** [[SJ21685]]
 
 
*** [[SJ16156]]
 
*** [[SJ16156]]
−
*** [[SJ12299]]
 
−
*** [[SJ14916]]
 
 
*** [[SJ21024]]
 
*** [[SJ21024]]
 +
*** [[SJ01345]]
 
*** [[SJ09590]]
 
*** [[SJ09590]]
−
*** [[SJ12497]]
+
*** [[SJ14984]]
 +
*** [[SJ13678]]
 +
*** [[SJ14916]]
 
*** [[SJ15529]]
 
*** [[SJ15529]]
−
*** [[SJ13678]]
+
*** [[SJ21685]]
−
*** [[SJ01345]]
+
−
*** [[SJ14984]]
+
 
*** [[SJ14704]]
 
*** [[SJ14704]]
 +
*** [[SJ12497]]
 +
*** [[SJ12299]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[GAPOXNPHOSPHN-RXN]]
 
* [[GAPOXNPHOSPHN-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
 +
*** [[SJ05204]]
 +
*** [[SJ07665]]
 
*** [[SJ00348]]
 
*** [[SJ00348]]
 
*** [[SJ05251]]
 
*** [[SJ05251]]
−
*** [[SJ05204]]
 
 
*** [[SJ14154]]
 
*** [[SJ14154]]
−
*** [[SJ07665]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[GLUCOKIN-RXN]]
 
* [[GLUCOKIN-RXN]]
 
** 3 associated gene(s):
 
** 3 associated gene(s):
−
*** [[SJ19906]]
 
 
*** [[SJ04919]]
 
*** [[SJ04919]]
 
*** [[SJ12224]]
 
*** [[SJ12224]]
 +
*** [[SJ19906]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[L-LACTATE-DEHYDROGENASE-RXN]]
 
* [[L-LACTATE-DEHYDROGENASE-RXN]]
 
** 1 associated gene(s):
 
** 1 associated gene(s):
 
*** [[SJ03192]]
 
*** [[SJ03192]]
−
** 2 reconstruction source(s) associated:
+
** 1 reconstruction source(s) associated:
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[PEPDEPHOS-RXN]]
 
* [[PEPDEPHOS-RXN]]
 
** 4 associated gene(s):
 
** 4 associated gene(s):
 +
*** [[SJ18193]]
 +
*** [[SJ17585]]
 
*** [[SJ18192]]
 
*** [[SJ18192]]
−
*** [[SJ18193]]
 
 
*** [[SJ13451]]
 
*** [[SJ13451]]
−
*** [[SJ17585]]
 
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 
*** [[orthology-ectocarpus_siliculosus]]
 
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[orthology-nannochloropsis_salina]]
 
−
*** [[annotation-saccharina_japonica_genome]]
 
 
* [[PGLUCISOM-RXN]]
 
* [[PGLUCISOM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 93: Line 93:
 
*** [[SJ08179]]
 
*** [[SJ08179]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[PHOSGLYPHOS-RXN]]
 
* [[PHOSGLYPHOS-RXN]]
 
** 6 associated gene(s):
 
** 6 associated gene(s):
−
*** [[SJ10780]]
 
−
*** [[SJ18020]]
 
−
*** [[SJ05024]]
 
 
*** [[SJ15992]]
 
*** [[SJ15992]]
−
*** [[SJ15971]]
+
*** [[SJ05024]]
 
*** [[SJ15991]]
 
*** [[SJ15991]]
 +
*** [[SJ18020]]
 +
*** [[SJ15971]]
 +
*** [[SJ10780]]
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIB5PISOM-RXN]]
 
* [[RIB5PISOM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 114: Line 114:
 
** 3 reconstruction source(s) associated:
 
** 3 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[RIBULP3EPIM-RXN]]
 
* [[RIBULP3EPIM-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 122: Line 122:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
* [[TRANSALDOL-RXN]]
 
* [[TRANSALDOL-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
Line 131: Line 131:
 
** 4 reconstruction source(s) associated:
 
** 4 reconstruction source(s) associated:
 
*** [[orthology-arabidopsis_thaliana]]
 
*** [[orthology-arabidopsis_thaliana]]
−
*** [[orthology-ectocarpus_siliculosus]]
 
−
*** [[orthology-nannochloropsis_salina]]
 
 
*** [[annotation-saccharina_japonica_genome]]
 
*** [[annotation-saccharina_japonica_genome]]
 +
*** [[orthology-nannochloropsis_salina]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
 
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
Line 141: Line 141:
 
{{#set: taxonomic range=TAX-201174}}
 
{{#set: taxonomic range=TAX-201174}}
 
{{#set: common name=Bifidobacterium shunt}}
 
{{#set: common name=Bifidobacterium shunt}}
−
{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}}
+
{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose 6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)|glucose fermentation to lactic acid (Bifidobacteria)}}
 
{{#set: reaction found=12}}
 
{{#set: reaction found=12}}
 
{{#set: total reaction=15}}
 
{{#set: total reaction=15}}
 
{{#set: completion rate=80.0}}
 
{{#set: completion rate=80.0}}

Latest revision as of 12:45, 10 January 2019

Pathway P124-PWY

  • taxonomic range:
  • common name:
    • Bifidobacterium shunt
  • Synonym(s):
    • Bifidum fermentation
    • Bifidum pathway
    • fructose 6-phosphate pathway
    • Bifidum shunt
    • glucose fermentation to lactate (Bifidobacteria)
    • glucose fermentation to lactic acid (Bifidobacteria)

Reaction(s) found

12 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=P124-PWY&oldid=17718"