Difference between revisions of "RXN-11356"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11356 RXN-11356] == * direction: ** LEFT-TO-RIGHT * common name: ** 9,9'-di-cis-ζ-carotene...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-7526]][c] '''+''' 1 [[ETR-Quinones]][c] '''=>''' 1 [[CPD-7524]][c] '''+''' 1 [[ETR-Quinols]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 1 9,9'-di-cis-ζ-carotene[c] '''+''' 1 an electron-transfer quinone[c] '''=>''' 1 7,9,9'-cis-neurosporene[c] '''+''' 1 an electron-transfer quinol[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ05238]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | * Gene: [[ | + | * Gene: [[SJ05680]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ05681]] | * Gene: [[SJ05681]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | * Gene: [[ | + | * Gene: [[SJ19120]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | + | * Gene: [[SJ08209]] | |
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY-6475]], trans-lycopene biosynthesis II ( | + | * [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] |
** '''8''' reactions found over '''8''' reactions in the full pathway | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 44: | Line 44: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30960 30960] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=9,9'-di-cis-ζ-carotene desaturase}} | {{#set: common name=9,9'-di-cis-ζ-carotene desaturase}} | ||
{{#set: common name=ζ-carotene desaturase|ZDS}} | {{#set: common name=ζ-carotene desaturase|ZDS}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=SJ05238|SJ05680|SJ05681|SJ19120|SJ08209}} |
{{#set: in pathway=PWY-6475}} | {{#set: in pathway=PWY-6475}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:43, 10 January 2019
Contents
Reaction RXN-11356
- direction:
- LEFT-TO-RIGHT
- common name:
- 9,9'-di-cis-ζ-carotene desaturase
- Synonym(s):
- ζ-carotene desaturase
- ZDS
Reaction Formula
- With identifiers:
- 1 CPD-7526[c] + 1 ETR-Quinones[c] => 1 CPD-7524[c] + 1 ETR-Quinols[c]
- With common name(s):
- 1 9,9'-di-cis-ζ-carotene[c] + 1 an electron-transfer quinone[c] => 1 7,9,9'-cis-neurosporene[c] + 1 an electron-transfer quinol[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ05238
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05680
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05681
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19120
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08209
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
- 8 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
