Difference between revisions of "RXN-12399"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12399 RXN-12399] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XLXG oligosaccha...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23] | ||
* common name: | * common name: | ||
** xyloglucan XLXG oligosaccharide β-galactosidase | ** xyloglucan XLXG oligosaccharide β-galactosidase | ||
** XLXG xyloglucan oligosaccharide β-galactosidase | ** XLXG xyloglucan oligosaccharide β-galactosidase | ||
** beta-galactosidase | ** beta-galactosidase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-13377]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 XLXG xyloglucan oligosaccharide[c] '''+''' 1 H2O[c] '''=>''' 1 XXXG xyloglucan oligosaccharide[c] '''+''' 1 D-galactopyranose[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[SJ04558]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
* Gene: [[SJ03139]] | * Gene: [[SJ03139]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ10277]] | * Gene: [[SJ10277]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| Line 45: | Line 45: | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: ec number=EC-3.2.1.23}} | ||
{{#set: common name=xyloglucan XLXG oligosaccharide β-galactosidase}} | {{#set: common name=xyloglucan XLXG oligosaccharide β-galactosidase}} | ||
{{#set: common name=XLXG xyloglucan oligosaccharide β-galactosidase}} | {{#set: common name=XLXG xyloglucan oligosaccharide β-galactosidase}} | ||
{{#set: common name=beta-galactosidase}} | {{#set: common name=beta-galactosidase}} | ||
| − | + | {{#set: gene associated=SJ04558|SJ03139|SJ10277|SJ14193}} | |
| − | {{#set: gene associated=SJ03139 | + | |
{{#set: in pathway=PWY-6807}} | {{#set: in pathway=PWY-6807}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:17, 10 January 2019
Contents
Reaction RXN-12399
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- xyloglucan XLXG oligosaccharide β-galactosidase
- XLXG xyloglucan oligosaccharide β-galactosidase
- beta-galactosidase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD-13377[c] + 1 WATER[c] => 1 CPD-13375[c] + 1 D-galactopyranose[c]
- With common name(s):
- 1 XLXG xyloglucan oligosaccharide[c] + 1 H2O[c] => 1 XXXG xyloglucan oligosaccharide[c] + 1 D-galactopyranose[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ04558
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ03139
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ10277
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14193
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6807, xyloglucan degradation II (exoglucanase): PWY-6807
- 3 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
