Difference between revisions of "RXN-7904"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA synthetase ** long-c...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* common name:
 
* common name:
 
** acyl-CoA synthetase
 
** acyl-CoA synthetase
 
** long-chain fatty acid-CoA ligase
 
** long-chain fatty acid-CoA ligase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''=>''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 a long-chain fatty acid[c] '''=>''' 1 a long-chain acyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
+
** 1 a long-chain fatty acid[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 a long-chain acyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ13972]]
+
* Gene: [[SJ08692]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ05591]]
 
* Gene: [[SJ05591]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ08692]]
+
* Gene: [[SJ03650]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ08691]]
 
* Gene: [[SJ08691]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ03650]]
+
* Gene: [[SJ08690]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ13972]]
−
* Gene: [[SJ08690]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
+
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 58: Line 58:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15422 15422]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 
* PIR:
 
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
Line 95: Line 99:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 
 
* UNIPROT:
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/O60135 O60135]
 
** [http://www.uniprot.org/uniprot/O60135 O60135]
Line 135: Line 137:
 
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-6.2.1.3}}
 
{{#set: common name=acyl-CoA synthetase}}
 
{{#set: common name=acyl-CoA synthetase}}
 
{{#set: common name=long-chain fatty acid-CoA ligase}}
 
{{#set: common name=long-chain fatty acid-CoA ligase}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: gene associated=SJ08692|SJ05591|SJ03650|SJ08691|SJ08690|SJ13972}}
−
{{#set: gene associated=SJ13972|SJ05591|SJ08692|SJ08691|SJ03650|SJ08690}}
+
{{#set: in pathway=PWY-7033|PWY-5143|PWY-6873|PWY-5885|PWY-6803}}
−
{{#set: in pathway=PWY-6803|PWY-5143|PWY-6873|PWY-7033|PWY-5885}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:18, 10 January 2019

Reaction RXN-7904

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • acyl-CoA synthetase
    • long-chain fatty acid-CoA ligase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7033, alkane biosynthesis II: PWY-7033
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5143, long-chain fatty acid activation: PWY-5143
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6873, long chain fatty acid ester synthesis (engineered): PWY-6873
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5885, wax esters biosynthesis II: PWY-5885
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6803, phosphatidylcholine acyl editing: PWY-6803
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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