Difference between revisions of "IGPSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-glycerol phospha...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48] | ** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48] | ||
| + | * common name: | ||
| + | ** indole-3-glycerol phosphate synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 | + | ** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 CO2[c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ17722]] | * Gene: [[SJ17722]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| Line 29: | Line 29: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY] | * [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY] | ||
| Line 37: | Line 37: | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 47: | Line 47: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508] | ** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508] | ||
| Line 82: | Line 82: | ||
** [http://www.uniprot.org/uniprot/P94327 P94327] | ** [http://www.uniprot.org/uniprot/P94327 P94327] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-4.1.1.48}} | {{#set: ec number=EC-4.1.1.48}} | ||
| + | {{#set: common name=indole-3-glycerol phosphate synthase}} | ||
{{#set: gene associated=SJ01083|SJ17722|SJ04593}} | {{#set: gene associated=SJ01083|SJ17722|SJ04593}} | ||
{{#set: in pathway=TRPSYN-PWY}} | {{#set: in pathway=TRPSYN-PWY}} | ||
Latest revision as of 14:20, 10 January 2019
Contents
Reaction IGPSYN-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- indole-3-glycerol phosphate synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P[c] => 1 INDOLE-3-GLYCEROL-P[c] + 1 CARBON-DIOXIDE[c] + 1 WATER[c]
- With common name(s):
- 1 H+[c] + 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] => 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] + 1 CO2[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ01083
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ17722
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04593
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
