Difference between revisions of "RXN0-2382"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** tryptophan synthase * ec nu...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122] | ** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122] | ||
| + | * common name: | ||
| + | ** tryptophan synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[SER]][c] '''+''' 1 [[INDOLE]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 L-serine[c] '''+''' 1 indole[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ09991]] | * Gene: [[SJ09991]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| − | |||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ16706]] | * Gene: [[SJ16706]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ20325]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ15468]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ10955]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| Line 35: | Line 35: | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| − | |||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 44: | Line 44: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674] | ** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-4.2.1.122}} | {{#set: ec number=EC-4.2.1.122}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=tryptophan synthase}} |
| + | {{#set: gene associated=SJ09991|SJ16706|SJ20325|SJ15468|SJ10955}} | ||
{{#set: in pathway=TRPSYN-PWY}} | {{#set: in pathway=TRPSYN-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:28, 10 January 2019
Contents
Reaction RXN0-2382
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- tryptophan synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 L-serine[c] + 1 indole[c] => 1 L-tryptophan[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ09991
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16706
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ20325
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ15468
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ10955
- Source: orthology-ectocarpus_siliculosus
Pathways
- TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
