Difference between revisions of "2.8.1.6-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin synthase * ec nu...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6] | ** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6] | ||
| + | * common name: | ||
| + | ** biotin synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 2 S-adenosyl-L-methionine[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 1 dethiobiotin[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c] '''+''' 2 5'-deoxyadenosine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 35: | Line 35: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078] | ** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078] | ||
| Line 58: | Line 58: | ||
** [http://www.uniprot.org/uniprot/O59778 O59778] | ** [http://www.uniprot.org/uniprot/O59778 O59778] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.8.1.6}} | {{#set: ec number=EC-2.8.1.6}} | ||
| + | {{#set: common name=biotin synthase}} | ||
{{#set: gene associated=SJ16348}} | {{#set: gene associated=SJ16348}} | ||
{{#set: in pathway=PWY0-1507|PWY-7380}} | {{#set: in pathway=PWY0-1507|PWY-7380}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:30, 10 January 2019
Contents
Reaction 2.8.1.6-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- biotin synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 S-ADENOSYLMETHIONINE[c] + 1 Sulfurated-Sulfur-Acceptors[c] + 1 DETHIOBIOTIN[c] + 2 Reduced-2Fe-2S-Ferredoxins[c] => 1 Unsulfurated-Sulfur-Acceptors[c] + 2 MET[c] + 2 Oxidized-2Fe-2S-Ferredoxins[c] + 1 BIOTIN[c] + 2 CH33ADO[c]
- With common name(s):
- 2 S-adenosyl-L-methionine[c] + 1 a sulfurated [sulfur carrier][c] + 1 dethiobiotin[c] + 2 a reduced [2Fe-2S] ferredoxin[c] => 1 an unsulfurated [sulfur carrier][c] + 2 L-methionine[c] + 2 an oxidized [2Fe-2S] ferredoxin[c] + 1 biotin[c] + 2 5'-deoxyadenosine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ16348
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
- 3 reactions found over 3 reactions in the full pathway
- PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
