Difference between revisions of "RXNARA-8002"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * common name: ** phytoene synthase * Syn...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[CPD-464]][c] '''=>''' 1 [[ | + | ** 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 prephytoene diphosphate[c] '''=>''' 1 | + | ** 1 prephytoene diphosphate[c] '''=>''' 1 15-cis-phytoene[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 23: | Line 23: | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | + | * [[PWY-5942]], trans-lycopene biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942] | |
| − | + | ||
| − | * [[PWY-5942]], trans-lycopene biosynthesis I | + | |
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| − | * [[PWY-6475]], trans-lycopene biosynthesis II ( | + | * [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] |
** '''8''' reactions found over '''8''' reactions in the full pathway | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287] | ||
| + | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
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*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270] | ** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270] | ||
| Line 43: | Line 45: | ||
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}} | {{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}} | ||
{{#set: gene associated=SJ02885}} | {{#set: gene associated=SJ02885}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-5942|PWY-6475|PWY-6287}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:57, 10 January 2019
Contents
Reaction RXNARA-8002
- direction:
- LEFT-TO-RIGHT
- common name:
- phytoene synthase
- Synonym(s):
- prephytoene-diphosphate synthase
- PSase
- geranylgeranyl-diphosphate geranylgeranyltransferase
Reaction Formula
- With identifiers:
- With common name(s):
- 1 prephytoene diphosphate[c] => 1 15-cis-phytoene[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ02885
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-5942, trans-lycopene biosynthesis I: PWY-5942
- 3 reactions found over 4 reactions in the full pathway
- PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
- 8 reactions found over 8 reactions in the full pathway
- PWY-6287, neurosporene biosynthesis: PWY-6287
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
