Difference between revisions of "RXN-7609"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase ** guanosine-...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* common name:
 
* common name:
 
** 5'-nucleotidase
 
** 5'-nucleotidase
 
** guanosine-5'-phosphate phosphohydrolase
 
** guanosine-5'-phosphate phosphohydrolase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[GMP]][c] '''=>''' 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 GMP[c] '''=>''' 1 guanosine[c] '''+''' 1 phosphate[c]
+
** 1 GMP[c] '''+''' 1 H2O[c] '''=>''' 1 guanosine[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[SJ18402]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ09030]]
 
* Gene: [[SJ09030]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
Line 24: Line 28:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ04587]]
 
−
** Source: [[orthology-nannochloropsis_salina]]
 
−
* Gene: [[SJ16098]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ15366]]
 
* Gene: [[SJ15366]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18402]]
+
* Gene: [[SJ16098]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ04587]]
 +
** Source: [[orthology-nannochloropsis_salina]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
+
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
 
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
+
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 56: Line 56:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27715 27715]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
 
** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-3.1.3.5}}
 
{{#set: common name=5'-nucleotidase}}
 
{{#set: common name=5'-nucleotidase}}
 
{{#set: common name=guanosine-5'-phosphate phosphohydrolase}}
 
{{#set: common name=guanosine-5'-phosphate phosphohydrolase}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: gene associated=SJ18402|SJ09030|SJ18895|SJ15366|SJ16098|SJ04587}}
−
{{#set: gene associated=SJ09030|SJ18895|SJ04587|SJ16098|SJ15366|SJ18402}}
+
{{#set: in pathway=PWY-6606|PWY-6607|PWY-6608}}
−
{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:19, 10 January 2019

Reaction RXN-7609

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • 5'-nucleotidase
    • guanosine-5'-phosphate phosphohydrolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GMP[c] + 1 H2O[c] => 1 guanosine[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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