Difference between revisions of "RXN-14048"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14048 RXN-14048] == * direction: ** LEFT-TO-RIGHT * common name: ** cystathionine gamma-lyase *...") |
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| Line 4: | Line 4: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | |||
** cystathionine γ-lyase | ** cystathionine γ-lyase | ||
| + | ** cystathionine gamma-lyase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[ | + | ** 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[CPD-15056]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 L-cystathionine[c] '''=>''' 1 L-cysteine | + | ** 1 L-cystathionine[c] '''=>''' 1 L-cysteine[c] '''+''' 1 (2Z)-2-aminobut-2-enoate[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ05358]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ05357]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| Line 28: | Line 28: | ||
== Pathways == | == Pathways == | ||
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY] | * [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY] | ||
| − | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
| − | + | ||
| − | + | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 41: | Line 39: | ||
* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24913 24913] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24913 24913] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R08632 R08632] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: common name=cystathionine γ-lyase}} | {{#set: common name=cystathionine γ-lyase}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=cystathionine gamma-lyase}} |
| − | {{#set: in pathway=HOMOCYSDEGR-PWY | + | {{#set: gene associated=SJ05358|SJ05357|SJ20026}} |
| + | {{#set: in pathway=HOMOCYSDEGR-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:29, 10 January 2019
Contents
Reaction RXN-14048
- direction:
- LEFT-TO-RIGHT
- common name:
- cystathionine γ-lyase
- cystathionine gamma-lyase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 L-CYSTATHIONINE[c] => 1 CYS[c] + 1 CPD-15056[c] + 1 PROTON[c]
- With common name(s):
- 1 L-cystathionine[c] => 1 L-cysteine[c] + 1 (2Z)-2-aminobut-2-enoate[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ05358
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05357
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20026
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- HOMOCYSDEGR-PWY, L-cysteine biosynthesis III (from L-homocysteine): HOMOCYSDEGR-PWY
- 2 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
