Difference between revisions of "DNA-DIRECTED-RNA-POLYMERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-DIRECTED-RNA-POLYMERASE-RXN DNA-DIRECTED-RNA-POLYMERASE-RXN] == * direction: ** REVERSIBLE * co...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.7.6 EC-2.7.7.6]
 
* common name:
 
* common name:
 
** DNA-directed 5'-3' RNA polymerase
 
** DNA-directed 5'-3' RNA polymerase
 
** RNA polymerase
 
** RNA polymerase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/2.7.7.6 EC-2.7.7.6]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Nucleoside-Triphosphates]][c] '''+''' 1 [[RNA-Holder]][c] '''<=>''' 1 [[RNA-Holder]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[Nucleoside-Triphosphates]][c] '''+''' 1 [[RNA-Holder]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a nucleoside triphosphate[c] '''+''' 1 RNA[c] '''<=>''' 1 RNA[c] '''+''' 1 diphosphate[c]
+
** 1 a nucleoside triphosphate[c] '''+''' 1 a ribonucleic acid[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a ribonucleic acid[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ00495]]
+
* Gene: [[SJ20648]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ14115]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ05246]]
+
* Gene: [[SJ06735]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ17132]]
+
* Gene: [[SJ12070]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ00841]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ20134]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
−
* Gene: [[SJ21402]]
+
* Gene: [[SJ00803]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ03336]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ20135]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ21840]]
+
* Gene: [[SJ17132]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ14115]]
+
* Gene: [[SJ01888]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ11123]]
+
* Gene: [[SJ22543]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ21618]]
+
* Gene: [[SJ21402]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ05538]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ05272]]
+
* Gene: [[SJ21840]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ01693]]
 
* Gene: [[SJ01693]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ21807]]
+
* Gene: [[SJ21618]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ22476]]
+
* Gene: [[SJ20135]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ06292]]
+
* Gene: [[SJ05246]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ00209]]
+
* Gene: [[SJ03336]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ05272]]
−
* Gene: [[SJ19064]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 86: Line 84:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ11974]]
+
* Gene: [[SJ00495]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ20134]]
+
* Gene: [[SJ11123]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
* Gene: [[SJ22543]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ17122]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ20622]]
+
* Gene: [[SJ19064]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ17122]]
+
* Gene: [[SJ00209]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 108: Line 107:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ05538]]
+
* Gene: [[SJ16014]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ01888]]
+
* Gene: [[SJ20622]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ06758]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ06292]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ12070]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ17061]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ20648]]
+
* Gene: [[SJ06758]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ16014]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ11974]]
−
* Gene: [[SJ17061]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ00841]]
−
* Gene: [[SJ00803]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ22476]]
−
* Gene: [[SJ06735]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ06734]]
 
* Gene: [[SJ06734]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ21807]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 480: Line 480:
 
** [http://www.uniprot.org/uniprot/P19749 P19749]
 
** [http://www.uniprot.org/uniprot/P19749 P19749]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-2.7.7.6}}
 
{{#set: common name=DNA-directed 5'-3' RNA polymerase}}
 
{{#set: common name=DNA-directed 5'-3' RNA polymerase}}
 
{{#set: common name=RNA polymerase}}
 
{{#set: common name=RNA polymerase}}
−
{{#set: ec number=EC-2.7.7.6}}
+
{{#set: gene associated=SJ20648|SJ14115|SJ06735|SJ12070|SJ20134|SJ00803|SJ17132|SJ01888|SJ22543|SJ21402|SJ05538|SJ21840|SJ01693|SJ21618|SJ20135|SJ05246|SJ03336|SJ05272|SJ03147|SJ00495|SJ11123|SJ17122|SJ19064|SJ00209|SJ02176|SJ16014|SJ20622|SJ06292|SJ17061|SJ06758|SJ11974|SJ00841|SJ22476|SJ06734|SJ21807}}
−
{{#set: gene associated=SJ00495|SJ05246|SJ17132|SJ00841|SJ21402|SJ03336|SJ20135|SJ21840|SJ14115|SJ11123|SJ21618|SJ05272|SJ01693|SJ21807|SJ22476|SJ06292|SJ00209|SJ19064|SJ03147|SJ11974|SJ20134|SJ22543|SJ20622|SJ17122|SJ02176|SJ05538|SJ01888|SJ06758|SJ12070|SJ20648|SJ16014|SJ17061|SJ00803|SJ06735|SJ06734}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:32, 10 January 2019

Reaction DNA-DIRECTED-RNA-POLYMERASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • DNA-directed 5'-3' RNA polymerase
    • RNA polymerase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=DNA-DIRECTED-RNA-POLYMERASE-RXN&oldid=21099"