Difference between revisions of "DXS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxyxylulose-5-phosphate syn...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 1-deoxyxylulose-5-phosphate synthase
 
−
** 1-deoxy-D-xylulose-5-phosphate synthase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 +
* common name:
 +
** 1-deoxy-D-xylulose-5-phosphate synthase
 +
** 1-deoxyxylulose-5-phosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
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** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ12529]]
 
* Gene: [[SJ12529]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
 
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
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* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
 
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12606 12606]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
 
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1-deoxyxylulose-5-phosphate synthase}}
 
−
{{#set: common name=1-deoxy-D-xylulose-5-phosphate synthase}}
 
 
{{#set: ec number=EC-2.2.1.7}}
 
{{#set: ec number=EC-2.2.1.7}}
 +
{{#set: common name=1-deoxy-D-xylulose-5-phosphate synthase}}
 +
{{#set: common name=1-deoxyxylulose-5-phosphate synthase}}
 
{{#set: gene associated=SJ15200|SJ12529}}
 
{{#set: gene associated=SJ15200|SJ12529}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PWY-6892|PYRIDOXSYN-PWY|PWY-7560}}
+
{{#set: in pathway=PYRIDOXSYN-PWY|NONMEVIPP-PWY|PWY-7560|PWY-6891|PWY-6892}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:33, 10 January 2019

Reaction DXS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • 1-deoxy-D-xylulose-5-phosphate synthase
    • 1-deoxyxylulose-5-phosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 pyruvate[c] + 1 D-glyceraldehyde 3-phosphate[c] => 1 1-deoxy-D-xylulose 5-phosphate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=DXS-RXN&oldid=21134"