Difference between revisions of "ISOCITDEH-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogena...") |
|||
Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42] | ** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42] | ||
+ | * common name: | ||
+ | ** isocitrate dehydrogenase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ | + | ** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 | + | ** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Line 22: | Line 22: | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
+ | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] |
− | ** ''' | + | ** '''11''' reactions found over '''19''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] |
− | ** ''' | + | ** '''8''' reactions found over '''10''' reactions in the full pathway |
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
** '''10''' reactions found over '''12''' reactions in the full pathway | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
− | |||
− | |||
− | |||
− | |||
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
** '''7''' reactions found over '''9''' reactions in the full pathway | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[ | + | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] |
− | + | ** '''9''' reactions found over '''12''' reactions in the full pathway | |
− | + | ||
− | ** '''9''' reactions found over ''' | + | |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
Line 54: | Line 54: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19632 19632] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267] | ** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267] | ||
Line 119: | Line 121: | ||
** [http://www.uniprot.org/uniprot/O75874 O75874] | ** [http://www.uniprot.org/uniprot/O75874 O75874] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
− | |||
{{#set: ec number=EC-1.1.1.42}} | {{#set: ec number=EC-1.1.1.42}} | ||
+ | {{#set: common name=isocitrate dehydrogenase}} | ||
{{#set: gene associated=SJ08749}} | {{#set: gene associated=SJ08749}} | ||
− | {{#set: in pathway= | + | {{#set: in pathway=TCA|REDCITCYC|PWY-7268|PWY-5913|PWY-6549|PWY-6728|PWY-7124|P105-PWY|FERMENTATION-PWY|PWY-6969|PWY-7254|P23-PWY}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 15:45, 10 January 2019
Contents
Reaction ISOCITDEH-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- isocitrate dehydrogenase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 THREO-DS-ISO-CITRATE[c] + 1 NADP[c] <=> 1 2-KETOGLUTARATE[c] + 1 CARBON-DIOXIDE[c] + 1 NADPH[c]
- With common name(s):
- 1 D-threo-isocitrate[c] + 1 NADP+[c] <=> 1 2-oxoglutarate[c] + 1 CO2[c] + 1 NADPH[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ08749
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
- 4 reactions found over 5 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 10 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 9 reactions found over 12 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- PIR:
- UNIPROT: