Difference between revisions of "SPERMIDINESYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine syn...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16] | ** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16] | ||
| + | * common name: | ||
| + | ** spermidine synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[SPERMIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 putrescine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''<=>''' 1 spermidine[c] '''+''' 1 H+[c] '''+''' 1 S-methyl-5'-thioadenosine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ05219]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | + | * Gene: [[SJ19088]] | |
| − | + | ||
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| Line 33: | Line 33: | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 43: | Line 43: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12724 12724] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920] | ** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920] | ||
| Line 54: | Line 54: | ||
** [http://www.uniprot.org/uniprot/O48660 O48660] | ** [http://www.uniprot.org/uniprot/O48660 O48660] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| − | |||
{{#set: ec number=EC-2.5.1.16}} | {{#set: ec number=EC-2.5.1.16}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=spermidine synthase}} |
| + | {{#set: gene associated=SJ05219|SJ19088}} | ||
{{#set: in pathway=BSUBPOLYAMSYN-PWY}} | {{#set: in pathway=BSUBPOLYAMSYN-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:55, 10 January 2019
Contents
Reaction SPERMIDINESYN-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- spermidine synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PUTRESCINE[c] + 1 S-ADENOSYLMETHIONINAMINE[c] <=> 1 SPERMIDINE[c] + 1 PROTON[c] + 1 5-METHYLTHIOADENOSINE[c]
- With common name(s):
- 1 putrescine[c] + 1 S-adenosyl 3-(methylthio)propylamine[c] <=> 1 spermidine[c] + 1 H+[c] + 1 S-methyl-5'-thioadenosine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ05219
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19088
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- BSUBPOLYAMSYN-PWY, spermidine biosynthesis I: BSUBPOLYAMSYN-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
