Difference between revisions of "PPGPPSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** guanosine-3',5'-bis(d...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/3.1.7.2 EC-3.1.7.2] | ** [http://enzyme.expasy.org/EC/3.1.7.2 EC-3.1.7.2] | ||
| + | * common name: | ||
| + | ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ | + | ** 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[GDP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 ppGpp[c] '''+''' 1 H2O[c] '''=>''' 1 | + | ** 1 ppGpp[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 GDP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ10100]] | * Gene: [[SJ10100]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
* Gene: [[SJ14690]] | * Gene: [[SJ14690]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ07200]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| Line 38: | Line 38: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14254 14254] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336] | ** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336] | ||
| Line 47: | Line 47: | ||
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24] | ** [http://www.uniprot.org/uniprot/P0AG24 P0AG24] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-3.1.7.2}} | {{#set: ec number=EC-3.1.7.2}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}} |
| + | {{#set: gene associated=SJ10100|SJ14690|SJ07200|SJ13961}} | ||
{{#set: in pathway=PPGPPMET-PWY}} | {{#set: in pathway=PPGPPMET-PWY}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 15:58, 10 January 2019
Contents
Reaction PPGPPSYN-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GUANOSINE-5DP-3DP[c] + 1 WATER[c] => 1 PROTON[c] + 1 PPI[c] + 1 GDP[c]
- With common name(s):
- 1 ppGpp[c] + 1 H2O[c] => 1 H+[c] + 1 diphosphate[c] + 1 GDP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ10100
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14690
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07200
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13961
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
