Difference between revisions of "RXN-14225"
From metabolic_network
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14225 RXN-14225] == | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14225 RXN-14225] == | ||
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
| − | + | ||
| − | + | ||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3] | ** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3] | ||
| + | * common name: | ||
| + | ** aldehyde dehydrogenase (NAD) | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 1 [[D-GLUCURONOLACTONE]][c] '''+''' 1 [[NAD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[D-GLUCARATE]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[NADH]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 1 D-glucurono-6,3-lactone[c] '''+''' 1 NAD+[c] '''+''' 2 H2O[c] '''=>''' 1 D-glucarate[c] '''+''' 3 H+[c] '''+''' 1 NADH[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ06456]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ06359]] | * Gene: [[SJ06359]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ06047]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ22552]] | * Gene: [[SJ22552]] | ||
| − | |||
| − | |||
| − | |||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| Line 42: | Line 35: | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ11330]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| − | *** Assignment: | + | *** Assignment: GO-TERM |
| − | + | ||
| − | + | ||
* Gene: [[SJ00435]] | * Gene: [[SJ00435]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ17249]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ10107]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ06470]] |
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ09287]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ05897]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 74: | Line 74: | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R02957 R02957] | ** [http://www.genome.jp/dbget-bin/www_bget?R02957 R02957] | ||
| − | {{#set: direction= | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | + | ||
{{#set: ec number=EC-1.2.1.3}} | {{#set: ec number=EC-1.2.1.3}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=aldehyde dehydrogenase (NAD)}} |
| + | {{#set: gene associated=SJ06456|SJ06359|SJ06047|SJ22552|SJ11331|SJ11330|SJ00435|SJ17249|SJ10107|SJ06470|SJ09287|SJ05897}} | ||
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 16:03, 10 January 2019
Contents
Reaction RXN-14225
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- aldehyde dehydrogenase (NAD)
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 D-GLUCURONOLACTONE[c] + 1 NAD[c] + 2 WATER[c] => 1 D-GLUCARATE[c] + 3 PROTON[c] + 1 NADH[c]
- With common name(s):
- 1 D-glucurono-6,3-lactone[c] + 1 NAD+[c] + 2 H2O[c] => 1 D-glucarate[c] + 3 H+[c] + 1 NADH[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ06456
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ06359
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ06047
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ22552
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ11331
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: annotation-saccharina_japonica_genome
- Gene: SJ11330
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ00435
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ17249
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ10107
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ06470
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ09287
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05897
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
