Difference between revisions of "F16ALDOLASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] == * direction: ** REVERSIBLE * common name: ** fructose bisphosph...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** fructose bisphosphate aldolase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/4.1.2.13 EC-4.1.2.13]
 
** [http://enzyme.expasy.org/EC/4.1.2.13 EC-4.1.2.13]
 +
* common name:
 +
** fructose bisphosphate aldolase
 
* Synonym(s):
 
* Synonym(s):
  
Line 13: Line 13:
 
** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
 
** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 fructose 1,6-bisphosphate[c] '''<=>''' 1 glycerone phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 &beta;-D-fructose 1,6-bisphosphate[c] '''<=>''' 1 glycerone phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ21513]]
+
* Gene: [[SJ22520]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ22520]]
+
* Gene: [[SJ12479]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ12479]]
+
* Gene: [[SJ13560]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-nannochloropsis_salina]]
 
 
* Gene: [[SJ17964]]
 
* Gene: [[SJ17964]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ13560]]
+
* Gene: [[SJ21513]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
 
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
** '''10''' reactions found over '''10''' reactions in the full pathway
 
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
−
** '''10''' reactions found over '''14''' reactions in the full pathway
+
** '''10''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 75: Line 75:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14732 14732]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
 
** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
Line 137: Line 137:
 
** [http://www.uniprot.org/uniprot/P53444 P53444]
 
** [http://www.uniprot.org/uniprot/P53444 P53444]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=fructose bisphosphate aldolase}}
 
 
{{#set: ec number=EC-4.1.2.13}}
 
{{#set: ec number=EC-4.1.2.13}}
−
{{#set: gene associated=SJ21513|SJ22520|SJ12479|SJ17964|SJ13560}}
+
{{#set: common name=fructose bisphosphate aldolase}}
−
{{#set: in pathway=PWY-1042|P341-PWY|GLUCONEO-PWY|GLYCOLYSIS|SUCSYN-PWY|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-1861|PWY-6142|PWY-5484|P185-PWY|PWY66-399}}
+
{{#set: gene associated=SJ22520|SJ12479|SJ13560|SJ17964|SJ21513}}
 +
{{#set: in pathway=PWY66-399|PWY-5484|GLYCOLYSIS|P185-PWY|SUCSYN-PWY|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|PWY-1861|CALVIN-PWY|P341-PWY|PWY-6142|PWY-1042|PWY-7385}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:08, 10 January 2019

Reaction F16ALDOLASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • fructose bisphosphate aldolase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-399, gluconeogenesis III: PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 15 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=F16ALDOLASE-RXN&oldid=22270"