Difference between revisions of "RIBOFLAVIN-SYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavi...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9] | ** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9] | ||
| + | * common name: | ||
| + | ** riboflavin synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 1 [[PROTON]][c] '''+''' 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine | + | ** 1 H+[c] '''+''' 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''=>''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''+''' 1 riboflavin[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] | * [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] | ||
** '''7''' reactions found over '''9''' reactions in the full pathway | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] | ||
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167] | ||
| + | ** '''5''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 40: | Line 40: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066] | ** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066] | ||
| Line 70: | Line 70: | ||
** [http://www.uniprot.org/uniprot/P50856 P50856] | ** [http://www.uniprot.org/uniprot/P50856 P50856] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.5.1.9}} | {{#set: ec number=EC-2.5.1.9}} | ||
| + | {{#set: common name=riboflavin synthase}} | ||
{{#set: gene associated=SJ11166}} | {{#set: gene associated=SJ11166}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=PWY-6168|RIBOSYN2-PWY|PWY-6167}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 11:01, 10 January 2019
Contents
Reaction RIBOFLAVIN-SYN-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- riboflavin synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 2 DIMETHYL-D-RIBITYL-LUMAZINE[c] => 1 AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE[c] + 1 RIBOFLAVIN[c]
- With common name(s):
- 1 H+[c] + 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] => 1 5-amino-6-(D-ribitylamino)uracil[c] + 1 riboflavin[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ11166
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6168, flavin biosynthesis III (fungi): PWY-6168
- 7 reactions found over 9 reactions in the full pathway
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-6167, flavin biosynthesis II (archaea): PWY-6167
- 5 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
