Difference between revisions of "RXN-8660"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8660 RXN-8660] == * direction: ** LEFT-TO-RIGHT * common name: ** [histone-H3]-lysine-36 demeth...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-8900]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8901]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 a [protein] N6,N6-dimethyl-L-lysine[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 a [protein] N6-methyl-L-lysine[c] '''+''' 1 succinate[c] '''+''' 1 formaldehyde[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ05371]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ13421]] | * Gene: [[SJ13421]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | * Gene: [[ | + | * Gene: [[SJ18735]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 40: | Line 34: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ00708]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ19102]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 46: | Line 46: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=[histone-H3]-lysine-36 demethylase}} | {{#set: common name=[histone-H3]-lysine-36 demethylase}} | ||
{{#set: common name=histone demethylase activity (H3-K36 specific)}} | {{#set: common name=histone demethylase activity (H3-K36 specific)}} | ||
{{#set: common name=JHDM1A|JmjC domain-containing histone demethylase 1A|H3-K36-specific demethylase|histone-lysine (H3-K36) demethylase|histone demethylase|protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase}} | {{#set: common name=JHDM1A|JmjC domain-containing histone demethylase 1A|H3-K36-specific demethylase|histone-lysine (H3-K36) demethylase|histone demethylase|protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=SJ05371|SJ13421|SJ18735|SJ19354|SJ00708|SJ19102}} |
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 15:18, 10 January 2019
Contents
Reaction RXN-8660
- direction:
- LEFT-TO-RIGHT
- common name:
- [histone-H3]-lysine-36 demethylase
- histone demethylase activity (H3-K36 specific)
- Synonym(s):
- JHDM1A
- JmjC domain-containing histone demethylase 1A
- H3-K36-specific demethylase
- histone-lysine (H3-K36) demethylase
- histone demethylase
- protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase
Reaction Formula
- With identifiers:
- 1 CPD-8900[c] + 1 2-KETOGLUTARATE[c] + 1 OXYGEN-MOLECULE[c] => 1 CPD-8901[c] + 1 SUC[c] + 1 FORMALDEHYDE[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 a [protein] N6,N6-dimethyl-L-lysine[c] + 1 2-oxoglutarate[c] + 1 oxygen[c] => 1 a [protein] N6-methyl-L-lysine[c] + 1 succinate[c] + 1 formaldehyde[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ05371
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13421
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ18735
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19354
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ00708
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19102
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
"histone-H3]-lysine-36 demethylase" cannot be used as a page name in this wiki.
