Difference between revisions of "SAMDECARB-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** adenosylmethionine...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50] | ** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50] | ||
| + | * common name: | ||
| + | ** adenosylmethionine decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ | + | ** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 | + | ** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
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** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ07458]] | * Gene: [[SJ07458]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834] | ||
| + | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY] | * [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY] | ||
** '''2''' reactions found over '''2''' reactions in the full pathway | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY] | * [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY] | ||
** '''2''' reactions found over '''2''' reactions in the full pathway | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| − | |||
| − | |||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 45: | Line 45: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178] | ** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178] | ||
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** [http://www.uniprot.org/uniprot/O02655 O02655] | ** [http://www.uniprot.org/uniprot/O02655 O02655] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-4.1.1.50}} | {{#set: ec number=EC-4.1.1.50}} | ||
| + | {{#set: common name=adenosylmethionine decarboxylase}} | ||
{{#set: gene associated=SJ16226|SJ07458}} | {{#set: gene associated=SJ16226|SJ07458}} | ||
| − | {{#set: in pathway=BSUBPOLYAMSYN-PWY|ARGSPECAT-PWY | + | {{#set: in pathway=PWY-6834|BSUBPOLYAMSYN-PWY|ARGSPECAT-PWY}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 16:34, 10 January 2019
Contents
Reaction SAMDECARB-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- adenosylmethionine decarboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 S-ADENOSYLMETHIONINE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 S-ADENOSYLMETHIONINAMINE[c]
- With common name(s):
- 1 S-adenosyl-L-methionine[c] + 1 H+[c] => 1 CO2[c] + 1 S-adenosyl 3-(methylthio)propylamine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ16226
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07458
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6834, spermidine biosynthesis III: PWY-6834
- 2 reactions found over 4 reactions in the full pathway
- BSUBPOLYAMSYN-PWY, spermidine biosynthesis I: BSUBPOLYAMSYN-PWY
- 2 reactions found over 2 reactions in the full pathway
- ARGSPECAT-PWY, spermine biosynthesis: ARGSPECAT-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
