Difference between revisions of "PHOSPHORIBULOKINASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] == * direction: ** REVERSIBLE * common name: ** ph...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.7.1.19 EC-2.7.1.19] | ** [http://enzyme.expasy.org/EC/2.7.1.19 EC-2.7.1.19] | ||
| + | * common name: | ||
| + | ** phosphoribulokinase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[RIBULOSE-5P]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[ADP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 D-ribulose 5-phosphate[c] '''+''' 1 ATP[c] '''<=>''' 1 H+[c] '''+''' 1 D-ribulose-1,5-bisphosphate[c] '''+''' 1 ADP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] | ||
| − | ** ''' | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
** '''10''' reactions found over '''10''' reactions in the full pathway | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
| Line 32: | Line 32: | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 42: | Line 42: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523] | ** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523] | ||
| Line 59: | Line 59: | ||
** [http://www.uniprot.org/uniprot/P27774 P27774] | ** [http://www.uniprot.org/uniprot/P27774 P27774] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| − | |||
{{#set: ec number=EC-2.7.1.19}} | {{#set: ec number=EC-2.7.1.19}} | ||
| + | {{#set: common name=phosphoribulokinase}} | ||
{{#set: gene associated=SJ04903}} | {{#set: gene associated=SJ04903}} | ||
{{#set: in pathway=CALVIN-PWY|PWY-5723}} | {{#set: in pathway=CALVIN-PWY|PWY-5723}} | ||
Latest revision as of 15:36, 10 January 2019
Contents
Reaction PHOSPHORIBULOKINASE-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- phosphoribulokinase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 RIBULOSE-5P[c] + 1 ATP[c] <=> 1 PROTON[c] + 1 D-RIBULOSE-15-P2[c] + 1 ADP[c]
- With common name(s):
- 1 D-ribulose 5-phosphate[c] + 1 ATP[c] <=> 1 H+[c] + 1 D-ribulose-1,5-bisphosphate[c] + 1 ADP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ04903
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
