Difference between revisions of "5.99.1.3-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.3-RXN 5.99.1.3-RXN] == * direction: ** REVERSIBLE * common name: ** DNA topoisomerase type I...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.99.1.3 EC-5.99.1.3]
 
* common name:
 
* common name:
 
** DNA topoisomerase type II (ATP-hydrolyzing)
 
** DNA topoisomerase type II (ATP-hydrolyzing)
 
** gyrase
 
** gyrase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/5.99.1.3 EC-5.99.1.3]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Double-Stranded-DNAs]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Negatively-super-coiled-DNAs]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[Double-Stranded-DNAs]][c] '''<=>''' 1 [[Negatively-super-coiled-DNAs]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a double stranded DNA[c] '''<=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 a negatively supercoiled DNA[c]
+
** 1 ATP[c] '''+''' 1 a double stranded DNA[c] '''<=>''' 1 a negatively supercoiled DNA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ01869]]
+
* Gene: [[SJ06656]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ03763]]
+
* Gene: [[SJ04867]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18171]]
+
* Gene: [[SJ07081]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ04866]]
+
* Gene: [[SJ18170]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ06656]]
+
* Gene: [[SJ06665]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ07018]]
+
* Gene: [[SJ04660]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18404]]
+
* Gene: [[SJ18171]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ13260]]
+
* Gene: [[SJ17437]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ07016]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ07081]]
+
* Gene: [[SJ01869]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ03015]]
+
* Gene: [[SJ16049]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ19269]]
+
* Gene: [[SJ07018]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ19844]]
+
* Gene: [[SJ04866]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ14012]]
+
* Gene: [[SJ18404]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ07017]]
+
* Gene: [[SJ18398]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ15546]]
+
* Gene: [[SJ08240]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ17437]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18399]]
+
* Gene: [[SJ19844]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ04867]]
+
* Gene: [[SJ07017]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ03059]]
+
* Gene: [[SJ20812]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ16049]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ08240]]
+
* Gene: [[SJ14012]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ06665]]
+
* Gene: [[SJ18399]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ04660]]
+
* Gene: [[SJ07016]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18398]]
+
* Gene: [[SJ03015]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ20812]]
+
* Gene: [[SJ03763]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ13260]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
* Gene: [[SJ02796]]
 
* Gene: [[SJ02796]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ18170]]
+
* Gene: [[SJ19269]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ15546]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ03059]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 167: Line 167:
 
** [http://www.uniprot.org/uniprot/Q9ZNH2 Q9ZNH2]
 
** [http://www.uniprot.org/uniprot/Q9ZNH2 Q9ZNH2]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-5.99.1.3}}
 
{{#set: common name=DNA topoisomerase type II (ATP-hydrolyzing)}}
 
{{#set: common name=DNA topoisomerase type II (ATP-hydrolyzing)}}
 
{{#set: common name=gyrase}}
 
{{#set: common name=gyrase}}
−
{{#set: ec number=EC-5.99.1.3}}
+
{{#set: gene associated=SJ06656|SJ04867|SJ07081|SJ18170|SJ06665|SJ04660|SJ18171|SJ17437|SJ01869|SJ16049|SJ07018|SJ04866|SJ18404|SJ18398|SJ08240|SJ19844|SJ07017|SJ20812|SJ14012|SJ18399|SJ07016|SJ03015|SJ03763|SJ13260|SJ02796|SJ19269|SJ15546|SJ03059}}
−
{{#set: gene associated=SJ01869|SJ03763|SJ18171|SJ04866|SJ06656|SJ07018|SJ18404|SJ13260|SJ07016|SJ07081|SJ03015|SJ19269|SJ19844|SJ14012|SJ07017|SJ15546|SJ17437|SJ18399|SJ04867|SJ03059|SJ16049|SJ08240|SJ06665|SJ04660|SJ18398|SJ20812|SJ02796|SJ18170}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:37, 10 January 2019

Reaction 5.99.1.3-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • DNA topoisomerase type II (ATP-hydrolyzing)
    • gyrase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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