Difference between revisions of "RXN-9680"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9680 RXN-9680] == * direction: ** LEFT-TO-RIGHT * common name: ** dimethylglycine-betaine methy...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** dimethylglycine-betaine methyltransferase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.1.1.161 EC-2.1.1.161]
 
** [http://enzyme.expasy.org/EC/2.1.1.161 EC-2.1.1.161]
 +
* common name:
 +
** dimethylglycine-betaine methyltransferase
 
* Synonym(s):
 
* Synonym(s):
 
** S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase
 
** S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase
Line 18: Line 18:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''=>''' 1 [[BETAINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETAINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 dimethylglycine[c] '''=>''' 1 glycine betaine[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 N,N-dimethylglycine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 glycine betaine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ12118]]
+
* Gene: [[SJ14716]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ10116]]
+
* Gene: [[SJ18177]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ12119]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 36: Line 33:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ18177]]
+
* Gene: [[SJ03081]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 42: Line 39:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ11087]]
+
* Gene: [[SJ02540]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ14716]]
+
* Gene: [[SJ12118]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ12128]]
+
* Gene: [[SJ11087]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ03081]]
+
* Gene: [[SJ10116]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ02540]]
+
* Gene: [[SJ12128]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ12119]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
 
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10072 10072]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10073 10073]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
 
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dimethylglycine-betaine methyltransferase}}
 
 
{{#set: ec number=EC-2.1.1.161}}
 
{{#set: ec number=EC-2.1.1.161}}
 +
{{#set: common name=dimethylglycine-betaine methyltransferase}}
 
{{#set: common name=S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase|sarcosine dimethylglycine N-methyltransferase|SDMT|sarcosine-dimethylglycine methyltransferase|ApDMT|GSDMT|glycine sarcosine dimethylglycine N-methyltransferase}}
 
{{#set: common name=S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase|sarcosine dimethylglycine N-methyltransferase|SDMT|sarcosine-dimethylglycine methyltransferase|ApDMT|GSDMT|glycine sarcosine dimethylglycine N-methyltransferase}}
−
{{#set: gene associated=SJ12118|SJ10116|SJ12119|SJ12116|SJ18177|SJ02539|SJ11087|SJ14716|SJ12128|SJ03081|SJ02540}}
+
{{#set: gene associated=SJ14716|SJ18177|SJ12116|SJ03081|SJ02539|SJ02540|SJ12118|SJ11087|SJ10116|SJ12128|SJ12119}}
−
{{#set: in pathway=PWY-6004|P541-PWY}}
+
{{#set: in pathway=P541-PWY|PWY-6004}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 11:08, 10 January 2019

Reaction RXN-9680

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • dimethylglycine-betaine methyltransferase
  • Synonym(s):
    • S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase
    • sarcosine dimethylglycine N-methyltransferase
    • SDMT
    • sarcosine-dimethylglycine methyltransferase
    • ApDMT
    • GSDMT
    • glycine sarcosine dimethylglycine N-methyltransferase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P541-PWY, glycine betaine biosynthesis IV (from glycine): P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine): PWY-6004
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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