Difference between revisions of "OHACYL-COA-DEHYDROG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-hydroxyacyl-CoA dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 +
* common name:
 +
** 3-hydroxyacyl-CoA dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[L-3-HYDROXYACYL-COA]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3S)-3-hydroxyacyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 a 3-oxoacyl-CoA[c] '''+''' 1 NADH[c]
+
** 1 NAD+[c] '''+''' 1 a (3S)-3-hydroxyacyl-CoA[c] '''=>''' 1 a 3-oxoacyl-CoA[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
 
* Gene: [[SJ17348]]
 
* Gene: [[SJ17348]]
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ06127]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ16470]]
 
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 29: Line 23:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ07211]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ21390]]
 
* Gene: [[SJ21390]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ16180]]
+
* Gene: [[SJ06127]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ07211]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ01444]]
 
* Gene: [[SJ01444]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ16180]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ16470]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
 
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
+
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22432 22432]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
 
* PIR:
 
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
Line 78: Line 80:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
 
 
* UNIPROT:
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P21177 P21177]
 
** [http://www.uniprot.org/uniprot/P21177 P21177]
Line 96: Line 96:
 
** [http://www.uniprot.org/uniprot/P00348 P00348]
 
** [http://www.uniprot.org/uniprot/P00348 P00348]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
 
 
{{#set: ec number=EC-1.1.1.35}}
 
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: gene associated=SJ17348|SJ06127|SJ16470|SJ03584|SJ21390|SJ16180|SJ07211|SJ01444}}
+
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
−
{{#set: in pathway=PWY-5136|PWY-7007|FAO-PWY|PWY66-391}}
+
{{#set: gene associated=SJ17348|SJ03584|SJ07211|SJ21390|SJ06127|SJ01444|SJ16180|SJ16470}}
 +
{{#set: in pathway=PWY-7007|PWY-5136|PWY66-391|FAO-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:14, 10 January 2019

Reaction OHACYL-COA-DEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • 3-hydroxyacyl-CoA dehydrogenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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