Difference between revisions of "GLUTAMATE-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common nam...")
 
 
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* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** NAD-dependent glutamate dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
 
** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
 +
* common name:
 +
** NAD-dependent glutamate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''<=>''' 1 ammonium[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
+
** 1 L-glutamate[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 ammonium[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ20174]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-nannochloropsis_salina]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ00250]]
 
* Gene: [[SJ00250]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ10621]]
+
* Gene: [[SJ20174]]
 +
** Source: [[orthology-nannochloropsis_salina]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ10621]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
+
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
 
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
** '''7''' reactions found over '''11''' reactions in the full pathway
 
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 55: Line 55:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
Line 75: Line 75:
 
** [http://www.uniprot.org/uniprot/O59650 O59650]
 
** [http://www.uniprot.org/uniprot/O59650 O59650]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=NAD-dependent glutamate dehydrogenase}}
 
 
{{#set: ec number=EC-1.4.1.2}}
 
{{#set: ec number=EC-1.4.1.2}}
−
{{#set: gene associated=SJ20174|SJ00250|SJ10621}}
+
{{#set: common name=NAD-dependent glutamate dehydrogenase}}
−
{{#set: in pathway=GLUTAMATE-DEG1-PWY|ALACAT2-PWY|P162-PWY|PWY-5022|PWY-6728|PWY-7126}}
+
{{#set: gene associated=SJ00250|SJ20174|SJ10621}}
 +
{{#set: in pathway=PWY-6728|PWY-7126|ALACAT2-PWY|P162-PWY|GLUTAMATE-DEG1-PWY|PWY-5022}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:21, 10 January 2019

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • NAD-dependent glutamate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 2-oxoglutarate[c] + 1 ammonium[c] + 1 NADH[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered): PWY-7126
    • 1 reactions found over 3 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate): ALACAT2-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 7 reactions found over 11 reactions in the full pathway
  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I: GLUTAMATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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