Difference between revisions of "RXN-16380"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain fatty acid-CoA l...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** long-chain fatty acid-CoA ligase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 +
* common name:
 +
** long-chain fatty acid-CoA ligase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[STEAROYL-COA]][c]
+
** 1 [[STEARIC_ACID]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 stearate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 stearoyl-CoA[c]
+
** 1 stearate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 stearoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ08690]]
+
* Gene: [[SJ03650]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ08692]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-nannochloropsis_salina]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ08691]]
 
* Gene: [[SJ08691]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ08692]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
* Gene: [[SJ13972]]
 
* Gene: [[SJ13972]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
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** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ03650]]
+
* Gene: [[SJ08690]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-nannochloropsis_salina]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
 
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=long-chain fatty acid-CoA ligase}}
 
 
{{#set: ec number=EC-6.2.1.3}}
 
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: gene associated=SJ08690|SJ08692|SJ08691|SJ13972|SJ05591|SJ03650}}
+
{{#set: common name=long-chain fatty acid-CoA ligase}}
 +
{{#set: gene associated=SJ03650|SJ08691|SJ08692|SJ13972|SJ05591|SJ08690}}
 
{{#set: in pathway=PWY-5989}}
 
{{#set: in pathway=PWY-5989}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:43, 10 January 2019

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • long-chain fatty acid-CoA ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 stearate[c] + 1 coenzyme A[c] + 1 ATP[c] => 1 stearoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-16380&oldid=15744"