Difference between revisions of "RXN-1882"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * common name: ** GDP-D-mannose 3'',5''-epimerase...") |
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* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18] | ** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18] | ||
| + | * common name: | ||
| + | ** GDP-D-mannose 3'',5''-epimerase | ||
* Synonym(s): | * Synonym(s): | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13] | * [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13] | ||
** '''2''' reactions found over '''3''' reactions in the full pathway | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115] | * [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] | * [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] | ||
| − | ** ''' | + | ** '''6''' reactions found over '''8''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 45: | Line 45: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11147 11147] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889] | ** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| − | |||
{{#set: ec number=EC-5.1.3.18}} | {{#set: ec number=EC-5.1.3.18}} | ||
| + | {{#set: common name=GDP-D-mannose 3'',5''-epimerase}} | ||
{{#set: gene associated=SJ02713}} | {{#set: gene associated=SJ02713}} | ||
| − | {{#set: in pathway=PWY4FS- | + | {{#set: in pathway=PWY4FS-13|PWY4FS-12|PWY-5115|PWY-882}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 12:01, 10 January 2019
Contents
Reaction RXN-1882
- direction:
- REVERSIBLE
- ec number:
- common name:
- GDP-D-mannose 3,5-epimerase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GDP-MANNOSE[c] <=> 1 GDP-L-GALACTOSE[c]
- With common name(s):
- 1 GDP-α-D-mannose[c] <=> 1 GDP-β-L-galactose[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ02713
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY4FS-13, extended VTC2 cycle: PWY4FS-13
- 2 reactions found over 3 reactions in the full pathway
- PWY4FS-12, VTC2 cycle: PWY4FS-12
- 2 reactions found over 2 reactions in the full pathway
- PWY-5115, GDP-L-galactose biosynthesis: PWY-5115
- 1 reactions found over 2 reactions in the full pathway
- PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
- 6 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
