Difference between revisions of "RXN0-2023"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2023 RXN0-2023] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA-specific 2-thiouridyla...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.8.1.13 EC-2.8.1.13] | ** [http://enzyme.expasy.org/EC/2.8.1.13 EC-2.8.1.13] | ||
| + | * common name: | ||
| + | ** tRNA-specific 2-thiouridylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[tRNA-uridine34]][c] '''+''' 1 [[TusE-S-sulfanylcysteine]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[TusE-L-cysteine]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-2-thiouridine34]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 a | + | ** 1 a uridine34 in tRNA[c] '''+''' 1 a [TusE sulfur carrier protein]-S-sulfanylcysteine[c] '''+''' 1 ATP[c] '''+''' 1 a reduced electron acceptor[c] '''=>''' 1 a [TusE sulfur carrier protein]-L-cysteine[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an oxidized electron acceptor[c] '''+''' 1 H+[c] '''+''' 1 a 2-thiouridine34 in tRNA[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 25: | Line 25: | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-7892]], tRNA-uridine 2-thiolation (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7892 PWY-7892] | ||
| + | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 34: | Line 36: | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.8.1.13}} | {{#set: ec number=EC-2.8.1.13}} | ||
| + | {{#set: common name=tRNA-specific 2-thiouridylase}} | ||
{{#set: gene associated=SJ13939|SJ00619}} | {{#set: gene associated=SJ13939|SJ00619}} | ||
| − | {{#set: in pathway=}} | + | {{#set: in pathway=PWY-7892}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 12:14, 10 January 2019
Contents
Reaction RXN0-2023
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- tRNA-specific 2-thiouridylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 tRNA-uridine34[c] + 1 TusE-S-sulfanylcysteine[c] + 1 ATP[c] + 1 Donor-H2[c] => 1 TusE-L-cysteine[c] + 1 AMP[c] + 1 PPI[c] + 1 Acceptor[c] + 1 PROTON[c] + 1 tRNA-2-thiouridine34[c]
- With common name(s):
- 1 a uridine34 in tRNA[c] + 1 a [TusE sulfur carrier protein]-S-sulfanylcysteine[c] + 1 ATP[c] + 1 a reduced electron acceptor[c] => 1 a [TusE sulfur carrier protein]-L-cysteine[c] + 1 AMP[c] + 1 diphosphate[c] + 1 an oxidized electron acceptor[c] + 1 H+[c] + 1 a 2-thiouridine34 in tRNA[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13939
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ00619
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7892, tRNA-uridine 2-thiolation (bacteria): PWY-7892
- 3 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
