Difference between revisions of "PYRUVDEH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyruvate dehydrogenas...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** pyruvate dehydrogenase (NAD+)
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
 
** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
 +
* common name:
 +
** pyruvate dehydrogenase (NAD+)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[ACETYL-COA]][c]
+
** 1 [[PYRUVATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 pyruvate[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 acetyl-CoA[c]
+
** 1 pyruvate[c] '''+''' 1 coenzyme A[c] '''+''' 1 NAD+[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 CO2[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ06474]]
+
* Gene: [[SJ19470]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ14925]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
** Source: [[orthology-arabidopsis_thaliana]]
 
−
* Gene: [[SJ10087]]
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ13629]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ19470]]
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ06474]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ10725]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
* Gene: [[SJ13629]]
 
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ10087]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ09312]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ10725]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ00971]]
 
* Gene: [[SJ00971]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ01042]]
 
* Gene: [[SJ01042]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ09312]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
* Gene: [[SJ14925]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
 
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-TCA-GLYOX-BYPASS GLYCOLYSIS-TCA-GLYOX-BYPASS]
+
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 
* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
 
* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-TCA-GLYOX-BYPASS GLYCOLYSIS-TCA-GLYOX-BYPASS]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 76: Line 76:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=pyruvate dehydrogenase (NAD+)}}
 
 
{{#set: ec number=EC-1.2.1}}
 
{{#set: ec number=EC-1.2.1}}
−
{{#set: gene associated=SJ06474|SJ10087|SJ19470|SJ10725|SJ13629|SJ00971|SJ01042|SJ09312|SJ14925}}
+
{{#set: common name=pyruvate dehydrogenase (NAD+)}}
−
{{#set: in pathway=PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
+
{{#set: gene associated=SJ19470|SJ14925|SJ13629|SJ06474|SJ10087|SJ09312|SJ10725|SJ00971|SJ01042}}
 +
{{#set: in pathway=PWY-5537|PWY-6886|PWY-7384|PWY-7218|PWY-5482|GLYCOLYSIS-TCA-GLYOX-BYPASS}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:15, 10 January 2019

Reaction PYRUVDEH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • pyruvate dehydrogenase (NAD+)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyruvate[c] + 1 coenzyme A[c] + 1 NAD+[c] => 1 acetyl-CoA[c] + 1 CO2[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-5482, pyruvate fermentation to acetate II: PWY-5482
    • 2 reactions found over 3 reactions in the full pathway
  • GLYCOLYSIS-TCA-GLYOX-BYPASS, superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: GLYCOLYSIS-TCA-GLYOX-BYPASS
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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