Difference between revisions of "RXN0-6480"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonuclease * ec number: *...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ribonuclease
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 +
* common name:
 +
** ribonuclease
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD0-2354]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[tRNA-fragment]][c] '''+''' 1 [[tRNAs]][c]
+
** 1 [[CPD0-2354]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[tRNAs]][c] '''+''' 1 [[tRNA-fragment]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tRNA precursor with a 5' extension[c] '''+''' 1 H2O[c] '''=>''' 1 a tRNA fragment[c] '''+''' 1 an uncharged tRNA[c]
+
** 1 a tRNA precursor with a 5' extension[c] '''+''' 1 H2O[c] '''=>''' 1 an uncharged tRNA[c] '''+''' 1 a tRNA fragment[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ17040]]
+
* Gene: [[SJ17384]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ09263]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ10376]]
 
* Gene: [[SJ10376]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ11313]]
+
* Gene: [[SJ19585]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ17384]]
+
* Gene: [[SJ17442]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ07712]]
+
* Gene: [[SJ04162]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ06697]]
+
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ19585]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 43: Line 36:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ17442]]
+
* Gene: [[SJ17040]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ04162]]
+
* Gene: [[SJ06336]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ06336]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ11313]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ07712]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ09263]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ06697]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
Line 65: Line 65:
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ribonuclease}}
 
 
{{#set: ec number=EC-3.1.26.5}}
 
{{#set: ec number=EC-3.1.26.5}}
−
{{#set: gene associated=SJ17040|SJ09263|SJ10376|SJ11313|SJ17384|SJ07712|SJ06697|SJ19585|SJ16938|SJ17442|SJ04162|SJ06336}}
+
{{#set: common name=ribonuclease}}
 +
{{#set: gene associated=SJ17384|SJ10376|SJ19585|SJ17442|SJ04162|SJ16938|SJ17040|SJ06336|SJ11313|SJ07712|SJ09263|SJ06697}}
 
{{#set: in pathway=PWY0-1479}}
 
{{#set: in pathway=PWY0-1479}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:03, 10 January 2019

Reaction RXN0-6480

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • ribonuclease
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNA precursor with a 5' extension[c] + 1 H2O[c] => 1 an uncharged tRNA[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN0-6480&oldid=18277"