Difference between revisions of "RXN-9655"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** fatty acid synthase ** 3-hydr...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** fatty acid synthase
 
−
** 3-hydroxydecanoyl-[acp] dehydrase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 +
* common name:
 +
** fatty acid synthase
 +
** 3-hydroxydecanoyl-[acp] dehydrase
 
* Synonym(s):
 
* Synonym(s):
 
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ00320]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ06944]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
 
* Gene: [[SJ19629]]
 
* Gene: [[SJ19629]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 +
* Gene: [[SJ10275]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
* Gene: [[SJ06616]]
 
* Gene: [[SJ06616]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ04443]]
+
* Gene: [[SJ10624]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ04769]]
+
* Gene: [[SJ11672]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ10624]]
+
* Gene: [[SJ15983]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ13014]]
+
* Gene: [[SJ06944]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 58: Line 55:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ10275]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
 
* Gene: [[SJ03883]]
 
* Gene: [[SJ03883]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ11672]]
+
* Gene: [[SJ06617]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ15983]]
+
* Gene: [[SJ04769]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ06617]]
+
* Gene: [[SJ00613]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ00613]]
+
* Gene: [[SJ00320]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ13014]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ04443]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 79: Line 79:
 
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
** '''31''' reactions found over '''31''' reactions in the full pathway
 
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
** '''31''' reactions found over '''31''' reactions in the full pathway
 
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 89: Line 89:
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=fatty acid synthase}}
 
−
{{#set: common name=3-hydroxydecanoyl-[acp] dehydrase}}
 
 
{{#set: ec number=EC-2.3.1.86}}
 
{{#set: ec number=EC-2.3.1.86}}
 
{{#set: ec number=EC-2.3.1.85}}
 
{{#set: ec number=EC-2.3.1.85}}
 
{{#set: ec number=EC-4.2.1.59}}
 
{{#set: ec number=EC-4.2.1.59}}
 +
{{#set: common name=fatty acid synthase}}
 +
{{#set: common name=3-hydroxydecanoyl-[acp] dehydrase}}
 
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
 
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
−
{{#set: gene associated=SJ00320|SJ06944|SJ19629|SJ06616|SJ04443|SJ04769|SJ10624|SJ13014|SJ18059|SJ17743|SJ10275|SJ03883|SJ11672|SJ15983|SJ06617|SJ00613}}
+
{{#set: gene associated=SJ19629|SJ10275|SJ06616|SJ10624|SJ11672|SJ15983|SJ06944|SJ18059|SJ17743|SJ03883|SJ06617|SJ04769|SJ00613|SJ00320|SJ13014|SJ04443}}
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
+
{{#set: in pathway=PWY-5971|PWY0-862|PWY-5994}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 13:05, 10 January 2019

Reaction RXN-9655

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • fatty acid synthase
    • 3-hydroxydecanoyl-[acp] dehydrase
  • Synonym(s):
    • (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
    • β-hydroxyacyl-ACP dehydrase
    • HDDase
    • β-hydroxyacyl-acyl carrier protein dehydratase
    • FabA
    • β-hydroxydecanoyl thiol ester dehydrase
    • β-hydroxydecanoate dehydrase
    • D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY0-862, (5Z)-dodec-5-enoate biosynthesis I: PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-hydroxydecanoyl-[acp] dehydrase" cannot be used as a page name in this wiki.
  • "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.
  • "D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-9655&oldid=18345"