Difference between revisions of "RXN0-5055"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5055 RXN0-5055] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-CoA carboxyltransfer...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.3.d EC-2.1.3.d]
 
* common name:
 
* common name:
 
** acetyl-CoA carboxyltransferase
 
** acetyl-CoA carboxyltransferase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/6.4.1.2 EC-6.4.1.2]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Carboxybiotin-BCCP]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[BCCP-dimers]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[MALONYL-COA]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a carboxylated-biotinylated [BCCP dimer][c] '''+''' 1 ATP[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 a biotinylated [BCCP dimer][c] '''+''' 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
+
** 1 acetyl-CoA[c] '''+''' 1 a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine[c] '''=>''' 1 malonyl-CoA[c] '''+''' 1 a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ17987]]
+
* Gene: [[SJ14528]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ06726]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ17987]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ00484]]
 
* Gene: [[SJ00484]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
Line 31: Line 31:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ14528]]
+
* Gene: [[SJ06726]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
 
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6722]], candicidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6722 PWY-6722]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-2.1.3.d}}
 
{{#set: common name=acetyl-CoA carboxyltransferase}}
 
{{#set: common name=acetyl-CoA carboxyltransferase}}
−
{{#set: ec number=EC-6.4.1.2}}
+
{{#set: gene associated=SJ14528|SJ17987|SJ00484|SJ14529|SJ06726}}
−
{{#set: gene associated=SJ17987|SJ06726|SJ00484|SJ14529|SJ14528}}
+
{{#set: in pathway=PWY-5744|PWY-5789|PWY-4381|PWY-5743|PWY0-1264|PWY-6722}}
−
{{#set: in pathway=PWY0-1264}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:07, 10 January 2019

Reaction RXN0-5055

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • acetyl-CoA carboxyltransferase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5744, glyoxylate assimilation: PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-4381, fatty acid biosynthesis initiation I: PWY-4381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle: PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY0-1264, biotin-carboxyl carrier protein assembly: PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6722, candicidin biosynthesis: PWY-6722
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN0-5055&oldid=18411"